RetrogeneDB ID: | retro_xmac_9 | ||
Retrocopy location | Organism: | Platyfish (Xiphophorus maculatus) | |
| Coordinates: | JH557076.1:114782..115853(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSXMAG00000019566 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | aplnra | ||
| Ensembl ID: | ENSXMAG00000015247 | ||
| Aliases: | None | ||
| Description: | apelin receptor a [Source:ZFIN;Acc:ZDB-GENE-060929-512] |
Retrocopy-Parental alignment summary:
>retro_xmac_9
ATGGAATCCACTACGACTCCTTATGACTACTACGACTACGAGGAGACAGAGAACTCCACTATGTGCGACTATTCAGAGTG
GGCGCCATCGTACTCTGTCATCCCGGTGCTCTACATGCTCATCTTCATCCTTGGCCTCTCAGGGAATGGGATCGTCATCT
TTACCGTGTGGAGGGCTCAAGGCAAGCATCGAGCTGCTGACGTCTACATTGGCAACCTGGCATTAGCAGACCTCACCTTC
GTGGTCACTCTGCCCCTCTGGGCCGTTTATACCGCCATGGGCTACCACTGGCCCTTTGGAGTGGCTCTGTGCAAGATAAG
CAGCTACGTGGTGCTTCTCAACATGTACGCCAGTGTCTTCTGCCTCACCTGCATGAGCTTTGACCGGTATCTGGCCATCG
TCCACTCCCTGACCAGCTCCCAGCTGCTCACCCGTCGACACATTCGAGCCTCGCTCGCAGTCATCTGGGTGCTGTCTGGT
CTGCTGGCTGCCCCCACTCTTCTGTTTCGCACCACCAAGTACGATCAGCAAACCAACCGAACATCTTGTGCCATGGACTT
CAGTCTGGTCGTGACCATTAAGGAGCAGGAGAACCTGTGGATCGCTGGTCTCAGCATCTCCTCCTCAGCTCTTGGCTTTC
TCCTTCCCTTCCTGGCAATGATGGTGTGCTATTGCTTCATCGGCTGCACCGTCACCCGCCACTTCAACACCCTGCGTAAG
GAGGATCAGCGTAAAAGGAGACTGCTGAAGATCATCACCACCCTGGTGGTGGTGTTTGCTGTCTGTTGGCTGCCCTTCCA
CCTTGTGAAAACCGCTGATGCCTTGTCATACGTAGATTTGGTCCCTGCCACCTGCGACTTCCTGCGCTTCCTGCTGCTGG
CTCACCCCTACGCTACCTGCCTGGCCTACGTCAACAGCTGCCTCAACCCCTTCCTTTATGCCTTCTTTGACCTGCGCTTC
AGATCTCAGTGCCTGTGCCTCCTTAATCTGAAGAAATTCCTGCATGCCAGTCCAAACAGCTCCATGTCCTCGCAGAAGAC
AGAGGCTCAGTCACTGGCCACAAAGGTGTGA
ORF - retro_xmac_9 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 67.19 % |
| Parental protein coverage: | 96.96 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | SDFVVLPFNVLREIFAVFTLNFDRKLLFCHSLSSNKLRSRGTMLASLGAIWLLSGVLSLPTLLFRTTMQD |
| S..VVL..N.....F......FDR.L...HSL.S..L..R....ASL..IW.LSG.L..PTLLFRTT..D | |
| Retrocopy | SSYVVL-LNMYASVFCLTCMSFDRYLAIVHSLTSSQLLTRRHIRASLAVIWVLSGLLAAPTLLFRTTKYD |
| Parental | LN-NQTICAMDFSLVTINQGHENLWIAGLSLSSSALGFLLPFLAMTIFYCFIGCTVTRHFNNLRKEDQKK |
| ...N.T.CAMDFSLV......ENLWIAGLS.SSSALGFLLPFLAM...YCFIGCTVTRHFN.LRKEDQ.K | |
| Retrocopy | QQTNRTSCAMDFSLVVTIKEQENLWIAGLSISSSALGFLLPFLAMMVCYCFIGCTVTRHFNTLRKEDQRK |
| Parental | KRLLKIITTLVVVFAICWIPFHVLKSLDALSYLNLAPNSCGVVRFVLLAHPYATCLAYVNSCLNPFLYAF |
| .RLLKIITTLVVVFA.CW.PFH..K..DALSY..L.P..C...RF.LLAHPYATCLAYVNSCLNPFLYAF | |
| Retrocopy | RRLLKIITTLVVVFAVCWLPFHLVKTADALSYVDLVPATCDFLRFLLLAHPYATCLAYVNSCLNPFLYAF |
| Parental | FDLRFRSQCLCLLNLKKAMHGQMSSMSSTLSAQTQKSEIQSLATKV |
| FDLRFRSQCLCLLNLKK..H....S..S..S.Q..K.E.QSLATKV | |
| Retrocopy | FDLRFRSQCLCLLNLKKFLH---ASPNSSMSSQ--KTEAQSLATKV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Xiphophorus maculatus was not studied using RNA-Seq expression data.
Xiphophorus maculatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_xmac_9 retrocopy.
Xiphophorus maculatus was not studied using FANTOM5 data.
retro_xmac_9 was not experimentally validated.
Retrocopy orthology:
Xiphophorus maculatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Xiphophorus maculatus | ENSXMAG00000015247 | 1 retrocopy |
retro_xmac_9 ,
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