RetrogeneDB ID:

retro_vvin_66

Retrocopy
location
Organism:Grape (Vitis vinifera)
Coordinates:12:7018693..7019203(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:VIT_18s0001g00210
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_vvin_66
AAAGACGTTGCTATTGAATTGGTTCAAGAACTTGACTCGAGAAGGTTGGATATTGTTTATGGCGGAGTAAGTGTTGGGTT
AATGAGTTTGGTTTCTTAGGAAGTTCATCGTGGTGGTGGACATGTACTTGGAATCATCTCCAAAACTCTGATGTGCAAAG
AAACAACTAGGAAAACAATAAGAGAGGTTCAAGCCATAGTCGACATGCACCAAAGGAAAGCTGAGATGGCCCACCATTCA
GATTGTTTTACCGCCTCATCAAGTGGCTATGGAACACTAGAGGAGTTATTGGAAGTCATCACATGGGCCCAGCTTGGAAT
CCATGACAAGCTTGTGGGTTTGCTGAATGTGGATGGCTACGAAAACTACCTCATTACTTTCATCGACAAAGCCGTGGATG
ATGGCTTCATCAAGCCCTCTCAGCATCACATTATCGTCTTTGCTCCAAATGCAAGAGAACTCATTCAAAAGCTCGAGGAA
TACGTGCATGTGCATTGTGAAATAGTGGCA

ORF - retro_vvin_66 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 80.59 %
Parental protein coverage: 77.63 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalRDAAIELAQELVSRRLDLVYGGGSVGLMGLVSQEVHRGGGHVLGIIPKTLMCKEITGETVGEVRPVADMH
.D.AIEL.QEL.SRRLD.VYGG.SVGLM.LVS.EVHRGGGHVLGII.KTLMCKE.T..T..EV....DMH
RetrocopyKDVAIELVQELDSRRLDIVYGGVSVGLMSLVS*EVHRGGGHVLGIISKTLMCKETTRKTIREVQAIVDMH
ParentalQRKAEMARHSDCFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNYLLTFIDKAVDDGFIKPS
QRKAEMA.HSDCF.A...GYGTLEELLEVITWAQLGIHDK.VGLLNVDGY.NYL.TFIDKAVDDGFIKPS
RetrocopyQRKAEMAHHSDCFTASSSGYGTLEELLEVITWAQLGIHDKLVGLLNVDGYENYLITFIDKAVDDGFIKPS
ParentalQRHIIVSAPNARELVQKLEEYVPVHDGVVA
Q.HIIV.APNAREL.QKLEEYV.VH...VA
RetrocopyQHHIIVFAPNARELIQKLEEYVHVHCEIVA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Vitis vinifera was not studied using RNA-Seq expression data.
Vitis vinifera was not studied using ChIP-Seq data.
Vitis vinifera was not studied using EST data.
Vitis vinifera was not studied using FANTOM5 data.
retro_vvin_66 was not experimentally validated.

Retrocopy orthology:
Vitis vinifera does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species Parental gene accession Retrocopies number
Vitis vinifera VIT_03s0038g034201 retrocopy
Vitis vinifera VIT_18s0001g00210 2 retrocopies
retro_vvin_65, retro_vvin_66 ,



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