RetrogeneDB ID:

retro_vvin_195

Retrocopy
location
Organism:Grape (Vitis vinifera)
Coordinates:Un:39114783..39114975(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:VIT_09s0002g03480
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_vvin_195
ATGGCACAACTGAGTCCATTGACTCAATGCACCGAATCGTACGTCGACTCACCTCACCCTTCGATTCAGCAGGCTGCAAG
TATGGACGCTGTTGCTTACCTTTTGAAGAACGATATATAAACTTTAGAAGCACTTGTCAGAGAGATGGGGATGTATTTGC
CCACTACAGATAATTTAATCCGTGCAAGAGAT

ORF - retro_vvin_195 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75. %
Parental protein coverage: 70.33 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAQLSQLTQYIESYVDSSRSSTQQAASVDAIAYLLKNDILTLETLVTEMGMYLTTTDNIIRTRE
MAQLS.LTQ..ESYVDS...S.QQAAS.DA.AYLLKNDI.TLE.LV.EMGMYL.TTDN.IR.R.
RetrocopyMAQLSPLTQCTESYVDSPHPSIQQAASMDAVAYLLKNDI*TLEALVREMGMYLPTTDNLIRARD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Vitis vinifera was not studied using RNA-Seq expression data.
Vitis vinifera was not studied using ChIP-Seq data.
Vitis vinifera was not studied using EST data.
Vitis vinifera was not studied using FANTOM5 data.
retro_vvin_195 was not experimentally validated.

Retrocopy orthology:
Vitis vinifera does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 11 retrocopies.

Species Parental gene accession Retrocopies number
Vitis vinifera VIT_09s0002g03480 11 retrocopies



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