RetrogeneDB ID:

retro_vvin_117

Retrocopy
location
Organism:Grape (Vitis vinifera)
Coordinates:18:11791396..11791599(-)
Located in intron of:VIT_18s0001g13810
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:VIT_04s0023g01310
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_vvin_117
ATGGCATTTTGTACACTAGCCTCCAATAAATGCCAATCAGAGGGTTTGAACCAGGTCAAGAACTACTGCCATCACCTGCA
AAGGCCAGTGTACACACGAGAGCAGGATGGTCGCTGCTCCATTTCTCACTTGAGAGCCCTCCTATTTTCCTTAAAACATC
AACAGGTAAGGTTTCAAGAACTCTCACAAGAACAAATTCCTCA

ORF - retro_vvin_117 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 68.12 %
Parental protein coverage: 66.67 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMAFCTLASNKYQSIGL-EPGQELLPSSAKANAHTRVGWLLPHFSLASPPVFLKTSTVKKGQVAAATGDN
MAFCTLASNK.QS.GL.EPGQELLPS.AKA..HTR.GW.L.HFSL.SPP.FLKTST.K.......T...
RetrocopyMAFCTLASNKCQSEGL<EPGQELLPSPAKASVHTRAGWSLLHFSLESPPIFLKTSTGKVSRTLTRTNSS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Vitis vinifera was not studied using RNA-Seq expression data.
Vitis vinifera was not studied using ChIP-Seq data.
Vitis vinifera was not studied using EST data.
Vitis vinifera was not studied using FANTOM5 data.
retro_vvin_117 was not experimentally validated.

Retrocopy orthology:
Vitis vinifera does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Vitis vinifera VIT_04s0023g01310 1 retrocopy
retro_vvin_117 ,



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