RetrogeneDB ID: | retro_vpac_382 | ||
Retrocopy location | Organism: | Alpaca (Vicugna pacos) | |
| Coordinates: | scaffold_143283:3..416(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSVPAG00000010483 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_vpac_382
TTTTATTTTTAAATGCTTGAGAGAAAAGTATCAGAATTTGAAATCATCCAGGAATTTATGGCTTTGGGATCTAAGAATCT
GCCTGCTGTGTTCAACTCTGGGAATGAACTACACGACAGAGACAAAAACAGATATCAAGATACTCTTCCATATGATTCAA
CACGTGTTCTTCTTGGAGAAAACAAGGACTACATCAATGCTAGTTATATTAAAATAGTCCATTCTGGAGAAGAGTATAAC
TACATCGCTACCCAAGGACCACTGCCAGGCACCGCAGATGACTTTGACAAATGGTTGTGGAAAATAACTCTAATGTTATT
GTCATGATAACCAGAGAGGTAGAAGATGGAGTTATCAAATGCCACCATTACTGGCCCATTTCTATGAAAAAGGAATTCCA
CCACATGAGCTGT
ORF - retro_vpac_382 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 84.89 % |
| Parental protein coverage: | 52.49 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | YYYEMLERKLSEFEIIEEFMALRSKNLPAVFNSGNELHNRHKNRYQDILPYDSTRVLLGENKDYINASYI |
| .Y..MLERK.SEFEII.EFMAL.SKNLPAVFNSGNELH.R.KNRYQD.LPYDSTRVLLGENKDYINASYI | |
| Retrocopy | FYF*MLERKVSEFEIIQEFMALGSKNLPAVFNSGNELHDRDKNRYQDTLPYDSTRVLLGENKDYINASYI |
| Parental | KIVHSGEEYNYIATQGPLPGTADDFQ-MVVENN-SNVIVMITREVEDGVIKCHHYWPISMKKPLELKSC |
| KIVHSGEEYNYIATQGPLPGTADDF....V..N.SNVIVMITREVEDGVIKCHHYWPISMKK.....SC | |
| Retrocopy | KIVHSGEEYNYIATQGPLPGTADDFD<QMVVENNSNVIVMITREVEDGVIKCHHYWPISMKKEFHHMSC |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Vicugna pacos was not studied using RNA-Seq expression data.
Vicugna pacos was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_vpac_382 retrocopy.
Vicugna pacos was not studied using FANTOM5 data.
retro_vpac_382 was not experimentally validated.
Retrocopy orthology:
Vicugna pacos does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Vicugna pacos | ENSVPAG00000010483 | 1 retrocopy |
retro_vpac_382 ,
|