RetrogeneDB ID: retro_ttru_869

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_409:264518..265078(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: INPP1
• Ensembl ID: ENSTTRG00000000558
• Aliases: None
• Description: inositol polyphosphate-1-phosphatase [Source:HGNC Symbol;Acc:6071]

Sequence

>retro_ttru_869
TGCCCGGGCGTGCAAGCCCTCTTCCAGCTGCTGATAGAAGAAAAGAAAGAGGGAGAAAAGAACAAGAAGTTTGCAGTTGA
TTTCAAGCCCCTGGCTGATGTACTGGTACAGGAAGTACGGAGAACAAGTTTCCAGGCTTGGGGGAAAAAATTTTTGGAGA
AGAATCCAATGAGTTTACAAATGATTTGGGGGAAAAGATTATCATGAGACTTTGTCCAACAGTGGAAGAAACAGTAGATC
TTCTCAACAAAGTCCTTAATGGTAACAAGTTGGCATCTGAAGCATTAGCCAAGGTTGTACATCAGGATGTTGTCTTTAGT
GACCCAGCTCTGGATGCAATAGAGATCAACATTCCGCAGGACACTTTGGGAGTTTGGGTGGATCCTATACATTCAACTTA
TCAGTATATAAAAGGTTCTGCTGACATTAAATCCAACCAAGGAATCTTCCCCAGTGGACTTCAGCGTGTCACTATTTTAA
TTGGTGTCTATGACATACAGACAGGGGTGCCCCTGATGGGAGTCATCAACCAACCTTTTGTATCACAAGACCTAAACACC

Alignment

ORF - retro_ttru_869 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.29 %
• Parental protein coverage: 90.09 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  CRQQEALFQLLIEEKKEGEKNKKFAVDFKTLADVLVQEVIKQNMENKFPGLGKK-IFGEESNEFTNDLXX
          C....ALFQLLIEEKKEGEKNKKFAVDFK.LADVLVQEV........F...GKK.IFGEESNEFTNDL..
Retrocopy CPGVQALFQLLIEEKKEGEKNKKFAVDFKPLADVLVQEV----RRTSFQAWGKK<IFGEESNEFTNDLGE

Parental  XXXXXXXXXXXXTVDLLNKVLNGNKLASEALAKVVHQDVVFSDPALDAIEINIPQDTLGVWVDPIDSTYQ
          ............TVDLLNKVLNGNKLASEALAKVVHQDVVFSDPALDAIEINIPQDTLGVWVDPI.STYQ
Retrocopy KIIMRLCPTVEETVDLLNKVLNGNKLASEALAKVVHQDVVFSDPALDAIEINIPQDTLGVWVDPIHSTYQ

Parental  YIKGSADIKSNQGIFPSGLQCVTILIGVYDIQTGVPLMGVINHPFVSQDLNT
          YIKGSADIKSNQGIFPSGLQ.VTILIGVYDIQTGVPLMGVIN.PFVSQDLNT
Retrocopy YIKGSADIKSNQGIFPSGLQRVTILIGVYDIQTGVPLMGVINQPFVSQDLNT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_869 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_869 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000000558	1 retrocopy	retro_ttru_869 ,