RetrogeneDB ID: retro_ttru_530

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_2604:42119..42307(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NPM2
• Ensembl ID: ENSTTRG00000008050
• Aliases: None
• Description: nucleophosmin/nucleoplasmin 2 [Source:HGNC Symbol;Acc:7930]

Sequence

>retro_ttru_530
AATGATGATGTAGATGTATCCCTAGAGGAGGAGACCCCTGTCAAACAAGTCAAGAGGCTAGTACCCCAGAAACAGACGAA
CATTACTGAGGAAGAAAAGGTGGAAAAAGAAGAGAAGCAGTGAGAACCAGTCTTAAAGACAAGAGCCCTGTGAGAAGGGC
CAAACCTGAAAAGTTGGGATCCAAGAAA

Alignment

ORF - retro_ttru_530 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.76 %
• Parental protein coverage: 51.94 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  DEDTDVSLEKETPVKQVKRLAPQKHTSIAKKKKVEKEE-VAVRYHPKDRSPVGKAKTTPRPKKPGFKK
          ..D.DVSLE.ETPVKQVKRL.PQK.T.I....KVEKEE..AVR...KD.SPV..AK....P.K.G.KK
Retrocopy NDDVDVSLEEETPVKQVKRLVPQKQTNITEEEKVEKEE<EAVRTSLKDKSPVRRAK----PEKLGSKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_530 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_530 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000009677	1 retrocopy	retro_mdom_847,
Tursiops truncatus	ENSTTRG00000008050	1 retrocopy	retro_ttru_530 ,