RetrogeneDB ID: | retro_ttru_426 | ||
Retrocopy location | Organism: | Dolphin (Tursiops truncatus) | |
| Coordinates: | GeneScaffold_2246:77793..78129(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSTTRG00000021410 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_ttru_426
ATGAGTGGGCATGTCAGAACAAGATCCCAATCTGCAGGAAGAAGAAATGATGGAGAGTCTTCCCAGCCAGTTAGACCTCT
GGTTGCTCAGCAGCTCAGTGATAAACAACCTCAACTAGAAGAACCACAAACTAAGAGTCAGGATATTATACCTGCTTATG
ACATTGAAGATGAAGGAGCATCTGTAGCTCAAAGGGCTGATATGGAAGCTGATCAGTAGAAACTGGTTCTCTTGAAGACT
GTGGATGAGCCTGGAGGTGGTCCTGATGTCAAGAAGGAGATTCTACCAAGTCTAGAGCCTGTTAAAATGCCAGAAGCTGG
TGAAGGACAACCACAG
ORF - retro_ttru_426 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 75.0 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MSGHVRRRSKSAGRR---ESSQVVGPLVAQQPSDKPPQLEEPPSENQDTISAQDIEGEGAPVAQGPAMEA |
| MSGHVR.RS.SAGRR...ESSQ.V.PLVAQQ.SDK.PQLEEP....QD.I.A.DIE.EGA.VAQ...MEA | |
| Retrocopy | MSGHVRTRSQSAGRRNDGESSQPVRPLVAQQLSDKQPQLEEPQTKSQDIIPAYDIEDEGASVAQRADMEA |
| Parental | DQQELPLLKTVDEPGDGPDVKEEILPSLEPIKMPEAGEGQPR |
| DQ..L.LLKTVDEPG.GPDVK.EILPSLEP.KMPEAGEGQP. | |
| Retrocopy | DQ*KLVLLKTVDEPGGGPDVKKEILPSLEPVKMPEAGEGQPQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_426 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_426 was not experimentally validated.
Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tursiops truncatus | ENSTTRG00000021410 | 1 retrocopy |
retro_ttru_426 ,
|
| Vicugna pacos | ENSVPAG00000008384 | 1 retrocopy |