RetrogeneDB ID: retro_ttru_4

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_116109:39885..41205(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSTTRG00000007204
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: KBTBD2
• Ensembl ID: ENSTTRG00000005751
• Aliases: None
• Description: Kelch repeat and BTB (POZ) domain containing 2 [Source:UniProtKB/TrEMBL;Acc:F4YE62]

Sequence

>retro_ttru_4
ATGTCCACTCAAGACGAGAAGCAGGTCAATACTGAATATGCTGTGTCCTTGTTGGAACAGTTAAAACTGTTTTATGAACA
GCAGTTGTTTACGGACATAGTGTTAATTGTCGAGGGCACTGAATTCCCTTGTCATAAGATGGTTCTTGCAACATGTAGTT
CTTACTTTAGGGCCATGTTCATGAGTGGACTAAGTGAAAGCAAACAGACACACATACACCTGAGGAATGTGGATTCAGCC
ACCTTACAGATAATAATAACGTACGCATACACGGGTAACCTGGCAATAAATGACAGCACTGTAGAACAACTTTACGAAAC
AGCTTGCTTCCTGCAGGTAGAAGATGTGTTACAACGTTGTCGAGAATATTTAATTAAAAAGATAAATGCAGAGAACTGTG
TGCGATTGTTGAGTTTTGCTGATCTGTTCAGTTGTGAGGAATTAAAACAAAGTGCTAAAAGGATGGTGGAGCACAAGTTC
ACTGCTGTGTATCACCAGGAAGCTTTCATGCAGCTGTCACATGACTTACTGATAGACATTCTCAGTAGTGACAATTTGAA
CGTAGAAAAGGAGGAGACAGTTCGTGAAGCTGCTATGCTGTGGCTAGAGTACAACACAGAATCACGATCCCAGTATTTGT
CTTCAGTTCTTAGCCAAATCAGAATTGATGCACTTTCAGAAGTAACACAGAGAGCTTGGTTTCAAGGTCTGCCACCCAAT
GATAAGTCTGTAGTTGTTCAAGGTCTGTATAAGTCCATGCCCAAGTTTTTCAAACCAAGACTTGGAATGACTAAAGAAGA
GACGATGATTTTCATTGAAGCATCTTCAGAAAATCCTTGTAGTCTTTACTCTTCTGTCTGTTACAGCCCCCAAGCAGAAA
AAGTTTACAAGCTATGCAGCCCACCAGCTGATTTACATAAGGTTGGGACCGTTGTAACTCCCGATAATGACATCTATATA
GCAGGTGGTCAAGTTCCTCTGAAAAATACAAAAACAAATCACAGTAAAACAAGCAAACTTCAGACTGCCTTTAGAACTGT
GAATTGCTTTTACTGGTTTGATGCACAGCAAAATACCTGGTTTCCAAAGACCCCGATGCTTTTTGTCCGCGTAAAGCCAT
CTTTGGTTTGCTGTGAAGGCTATCTCTATGCAATTGGAGGAGATAGTGTAGGTGGAGAACTTAACCGGAGGACCGTAGAA
AGATATGACACTGAGAAAGATGAATGGACAATGGTAAGCCCTTTGCCTTGTGCTTGGCAGTGGAGTGCAGCAGTTGTGGT
TCATGACTGCATTTACGTGATGACACTGAACCTCATGTAT

Alignment

ORF - retro_ttru_4 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.55 %
• Parental protein coverage: 70.63 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSTQDEKQVNTEYAVSLLEQLKLFYEQQLFTDIVLIVEGTEFPCHKMVLATCSSYFRAMFMSGLSESKQT
          MSTQDEKQVNTEYAVSLLEQLKLFYEQQLFTDIVLIVEGTEFPCHKMVLATCSSYFRAMFMSGLSESKQT
Retrocopy MSTQDEKQVNTEYAVSLLEQLKLFYEQQLFTDIVLIVEGTEFPCHKMVLATCSSYFRAMFMSGLSESKQT

Parental  HIHLRNVDSATLQIIITYAYTGNLAINDSTVEQLYETACFLQVEDVLQRCREYLIKKINAENCVRLLSFA
          HIHLRNVDSATLQIIITYAYTGNLAINDSTVEQLYETACFLQVEDVLQRCREYLIKKINAENCVRLLSFA
Retrocopy HIHLRNVDSATLQIIITYAYTGNLAINDSTVEQLYETACFLQVEDVLQRCREYLIKKINAENCVRLLSFA

Parental  DLFSCEELKQSAKRMVEHKFTAVYHQEAFMQLSHDLLIDILSSDNLNVEKEETVREAAMLWLEYNTESRS
          DLFSCEELKQSAKRMVEHKFTAVYHQEAFMQLSHDLLIDILSSDNLNVEKEETVREAAMLWLEYNTESRS
Retrocopy DLFSCEELKQSAKRMVEHKFTAVYHQEAFMQLSHDLLIDILSSDNLNVEKEETVREAAMLWLEYNTESRS

Parental  QYLSSVLSQIRIDALSEVTQRAWFQGLPPNDKSVVVQGLYKSMPKFFKPRLGMTKEEMMIFIEASSENPC
          QYLSSVLSQIRIDALSEVTQRAWFQGLPPNDKSVVVQGLYKSMPKFFKPRLGMTKEE.MIFIEASSENPC
Retrocopy QYLSSVLSQIRIDALSEVTQRAWFQGLPPNDKSVVVQGLYKSMPKFFKPRLGMTKEETMIFIEASSENPC

Parental  SLYSSVCYSPQAEKVYKLCSPPADLHKVGTVVTPDNDIYIAGGQVPLKNTKTNHSKTSKLQTAFRTVNCF
          SLYSSVCYSPQAEKVYKLCSPPADLHKVGTVVTPDNDIYIAGGQVPLKNTKTNHSKTSKLQTAFRTVNCF
Retrocopy SLYSSVCYSPQAEKVYKLCSPPADLHKVGTVVTPDNDIYIAGGQVPLKNTKTNHSKTSKLQTAFRTVNCF

Parental  YWFDAQQNTWFPKTPMLFVRVKPSLVCCEGYIYAIGGDSVGGELNRRTVERYDTEKDEWTMVSPLPCAWQ
          YWFDAQQNTWFPKTPMLFVRVKPSLVCCEGY.YAIGGDSVGGELNRRTVERYDTEKDEWTMVSPLPCAWQ
Retrocopy YWFDAQQNTWFPKTPMLFVRVKPSLVCCEGYLYAIGGDSVGGELNRRTVERYDTEKDEWTMVSPLPCAWQ

Parental  WSAAVVVHDCIYVMTLNLMY
          WSAAVVVHDCIYVMTLNLMY
Retrocopy WSAAVVVHDCIYVMTLNLMY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_4 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_4 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tursiops truncatus	ENSTTRG00000005751	1 retrocopy	retro_ttru_4 ,