RetrogeneDB ID: retro_ttru_162

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: GeneScaffold_144:187563..188798(-)
• Located in intron of: ENSTTRG00000014672

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BZW2
• Ensembl ID: ENSTTRG00000009867
• Aliases: None
• Description: basic leucine zipper and W2 domains 2 [Source:HGNC Symbol;Acc:18808]

Sequence

>retro_ttru_162
AAGCAGCAAAAGCCAACGCTATCAGGCCAGCATTTTAAAACCAGAAAAAGAGATGAAAAAGAAAGGTTTGACCCTACTCA
GTTTCAAGACTGCATTATTCAAGGCTTAACTGAAACTGGTACTGATTTGGAAGCAGTAGCAAAGTTTCCTGATGCTTCTG
GAGCAAAACTTGATTACCGCTGATATGCAGAAACACTCTTTGACATTCTGGTGGCCGGTGGAATGCTGGCCCCAGGTGGT
ACACTGGCAGATGACATGATGCGTACAGATGTCTGTGTGTTCGCAGCACAAGAAGACCTAGAGACCATGCAAGCATTTGC
TCAGGTTTTTAACAAGTTAATCAGGCGCTACAAATACCTGGAGAAGGGTTTTGAAGATGAAGTTAAAAAGCTGCTGCTGT
TCTTAAAGGGTTTTTCAGAGTCGGAGAGGAACAAGCTGGCTATGTTGACTGGTGTTCTTCTGGCTAATGGAACACTTAAC
GCATCCATTCTTAATAGCCTTTATAATGAGAATTTGGTTAAAGAAGGGGTTTCAGCAGCTTTTGCTGTAAAGCTCTTTAA
ATCATGGGTAAATGAAAAAGATATCAATGCAGTAGCTTCAAGTCTTTGGAAAGTGAGCATGGATAACAGACTTATGGAAC
TGTTTCCTGCCGATAAACAAAGTGTTGAACGCTTCACAAAGTATTTTACTGAGGCAGGCTTGAAAGAATTTTCACAGTAT
GTTCGGAATCAGCAAACCATAGGAACTCGTAAGGAACTCCAGAAAGAACTTCAAGAACAGATGTCCCATGGTGTTCCATT
TAAGGATATAATTTTGTATGTCAAGGAGGAGATGAAAAAAAACATCCCAGAACCAGCTGTCATCGGAATAGTATGGTCCA
GTGCAATGAGCACTGTGGAATGGAACAAAAAAGAGGAGCTTGTAGCAGAGCAAGCCATCAAGCACTTGAAGCAATACAGC
CCTCTACTTGCTGCCTTTACAACTCAAGGTCAGTCTGAGATGACTCTGTTACTGAAGATTCAGGAGTATTGCTATGACAA
CATTCATTTCATGAAAGCCTTCCAGAAAATAGTGGTGCTTTTTTATAAAACTGAAGTTCTGAGTGAAGAACCCATCTGAA
GTGGTATAAAGATACACATGTTGCCAAGGGGAAAAGTGTCTTCCTTGAGCAAATGAAAAATTTTGTATAGTGGCTCAAAA
ATGCTGAAGAAGAATCTGAGTCTGAAGCTGAAGAA

Alignment

ORF - retro_ttru_162 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.54 %
• Parental protein coverage: 99.28 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLIQGLNEAGDDLEAVAKFLDSTGSRLDYRRYADTLFDIL
          K.QKP.L.GQ.FKTRKRDEKE.F.PT.F.D..IQGL.E.G.DLEAVAKF.D..G..LDYR.YA.TLFDIL
Retrocopy KQQKPTLSGQHFKTRKRDEKERFDPTQFQDCIIQGLTETGTDLEAVAKFPDASGAKLDYR*YAETLFDIL

Parental  VAGSMLAPGGTRIDDGDKTKMTNHCVFSANEDHETIRNYAQVFNKLIRRYKYLEKAFEDEMKKLLLFLKA
          VAG.MLAPGGT..DD...T.....CVF.A.ED.ET....AQVFNKLIRRYKYLEK.FEDE.KKLLLFLK.
Retrocopy VAGGMLAPGGTLADDMMRTDV---CVFAAQEDLETMQAFAQVFNKLIRRYKYLEKGFEDEVKKLLLFLKG

Parental  FSEAEQTKLAMLSGILLGNGNLPANILTSLFTDSLVKEGIAASFAVKLFKAWMAEKDANSVTSSLRKANL
          FSE.E..KLAML.G.LL.NG.L.A.IL.SL....LVKEG..A.FAVKLFK.W..EKD.N.V.SSL.K...
Retrocopy FSESERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGVSAAFAVKLFKSWVNEKDINAVASSLWKVSM

Parental  DKRLLELFPVNRQSVDHFAQYFTDAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEE
          D.RL.ELFP...QSV..F..YFT.AGLKE.S...R.QQ..GTRKELQKELQE..S...P.K...LYVKEE
Retrocopy DNRLMELFPADKQSVERFTKYFTEAGLKEFSQYVRNQQTIGTRKELQKELQEQMSHGVPFKDIILYVKEE

Parental  MKRNDLPETAVIGLLWTCIMNAVEWNKKEELVAEQALKHLKQYAPLLAVFSSQGQSELILLQKVQEYCYD
          M.....PE.AVIG..W...M..VEWNKKEELVAEQA.KHLKQY.PLLA.F..QGQSE..LL.K.QEYCYD
Retrocopy M-XXXIPEPAVIGIVWSSAMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFTTQGQSEMTLLLKIQEYCYD

Parental  NIHFMKAFQKIVVLFYKADVLSEEAI-LKWYKEAHVAKGKSVFLDQMKKFVEWLQNAEEESESEGEE
          NIHFMKAFQKIVVLFYK..VLSEE.I.LKWYK..HVAKGKSVFL.QMK.FV.WL.NAEEESESE.EE
Retrocopy NIHFMKAFQKIVVLFYKTEVLSEEPI<LKWYKDTHVAKGKSVFLEQMKNFV*WLKNAEEESESEAEE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_162 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_162 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 10 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000001663	4 retrocopies	retro_dnov_2177, retro_dnov_2422, retro_dnov_2649, retro_dnov_575,
Equus caballus	ENSECAG00000022038	1 retrocopy	retro_ecab_1121,
Macaca mulatta	ENSMMUG00000017045	1 retrocopy	retro_mmul_1457,
Ochotona princeps	ENSOPRG00000005256	2 retrocopies	retro_opri_665, retro_opri_9,
Pongo abelii	ENSPPYG00000017763	1 retrocopy	retro_pabe_2385,
Pteropus vampyrus	ENSPVAG00000014571	1 retrocopy	retro_pvam_481,
Ictidomys tridecemlineatus	ENSSTOG00000002506	1 retrocopy	retro_itri_1286,
Tarsius syrichta	ENSTSYG00000009806	1 retrocopy	retro_tsyr_1923,
Tursiops truncatus	ENSTTRG00000003639	1 retrocopy	retro_ttru_153,
Tursiops truncatus	ENSTTRG00000009867	1 retrocopy	retro_ttru_162 ,