RetrogeneDB ID: retro_tsyr_997

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_270131:10..522(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTSYG00000000043
• Aliases: None
• Description: None

Sequence

>retro_tsyr_997
AAAGAAGATCACAGCAAAAGGAGCAGTTTTGTTTGCGTGCTTCTGAGCCATGGTGAAGAAGGAGTAATTTTTGGAACAAA
TGACCTCTTGACTTGAAAAAAATAACAAGTTTTTTCAGAGGGGATTACTGTAGAAGTCTAACTGGAAAACCCAAACTTTT
CATTATTCAGGCCTGCCGAGGTACAGAACTGGACTTTGGCATTGAGACCGACAGCGGTATTTATGATGATATGGCATGTC
AGAAAATTCCAGTGGAGGCCGACTTCTTGTATGCATACTTCACAGCACCTGGTTACTATTCCTGGCGAAATTCAAAAGAT
GGGTCCTGGTTTATCTAGTCACTGTGTGCCATGCTGAAACAGTATGCTAACAAGCTGAAGTTCATGCACATTCTTACCCG
GGTTAACCGAATGGTGGCAACAGAATTTGAGTCCTTTTCTTTTGACATTACTTTTCATGCAAAGAAACAGATTCCTTGTA
TTGTGTCCATGCTCACAAAAGAGCTATATTTT

Alignment

ORF - retro_tsyr_997 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 57.71 %
• Parental protein coverage: 57.28 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EEDHTNSACFACILLSHGEENLIYGKDGVTP-IKELTAHFRGR-CKTLFKKPKLFFIQACRGTELDDGIQ
          .EDH.....F.C.LLSHGEE..I.G........K..T..FRG..C..L..KPKLF.IQACRGTELD.GI.
Retrocopy KEDHSKRSSFVCVLLSHGEEGVIFGTNDLLT<LKKITSFFRGDYCRSLTGKPKLFIIQACRGTELDFGIE

Parental  ADSGPINDTDANPRYKIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVN
          .DSG...D.......KIPVEADFL.AY.T.PGYYSWR....GSWF...LC..L......L..M.ILTRVN
Retrocopy TDSGIYDDMACQ---KIPVEADFLYAYFTAPGYYSWRNSKDGSWFI*SLCAMLKQYANKLKFMHILTRVN

Parental  YRVARHFESQSDDPLFHEKKQIPCVVSMLTKELYF
          ..VA..FES.S.D..FH.KKQIPC.VSMLTKELYF
Retrocopy RMVATEFESFSFDITFHAKKQIPCIVSMLTKELYF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_997 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000000043	1 retrocopy	retro_tsyr_997 ,