RetrogeneDB ID: | retro_tsyr_799 | ||
Retrocopy location | Organism: | Tarsier (Tarsius syrichta) | |
| Coordinates: | scaffold_2045:23481..24102(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | NEU1 | ||
| Ensembl ID: | ENSTSYG00000001850 | ||
| Aliases: | None | ||
| Description: | sialidase 1 (lysosomal sialidase) [Source:HGNC Symbol;Acc:7758] |
Retrocopy-Parental alignment summary:
>retro_tsyr_799
AAACAGCGGGAACCACAGAAGGGCCACTTCCTTGTTTGTGGCCATGGGACGCTGGAGCAGGTTGGGGTCTTCTGTCACCT
CAGCAATGATCACAGTGCTGCCTGGTGCTATGGGTGTGGGGTCAGCGGCATCCCCTATGGCCAGCCCAAGTGAGAAAATA
ATTTCAACCCTGATGAATGCCAGTTCTGTGAGCTCCCAGATGGCTCACTCGTCATCAACACTCAGAACAAGAACAATTAC
CACTGCCATTGCCAGATTGTCCTCCACAGTTATTACATCTGTGATACACTAAGGCCCCGCAATGTGACCTTTGACCCTGA
GCTCATAGACCCCCGTGGTAGCTGCAGGTGCTGCAGCTACCAGCTCCGGCATTGTCTTCCCCTCCAACCCAGTGCATCCA
GAGTTCCAAGTGAACCTGATCCTGCACTGGAACTTCAGCGGTGGTACCTCATAGCAGAAAGAGATGGTCCAGCTATGTCC
AGTGCCCACTGGCTACTCATCTGGCAGCCCTGGAGGGCAGCATGGACAGAGAGGAGCAGCCCTTCCCCTCCTGTATGAGA
AAGACCAGACCACTACACAGAGAGCATCCCCATGGCCAAAGTCAGCATGTATGGGACGCTG
ORF - retro_tsyr_799 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 66.51 % |
| Parental protein coverage: | 50.24 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | KQREPQKGRLIVCGHGTLERDGVFCLLSDDHGASWRYGSGVSGIPYGQPKRENDFNPDECQPYELPDGSV |
| KQREPQKG...VCGHGTLE..GVFC.LS.DH.A.W.YG.GVSGIPYGQPK.EN.FNPDECQ..ELPDGS. | |
| Retrocopy | KQREPQKGHFLVCGHGTLEQVGVFCHLSNDHSAAWCYGCGVSGIPYGQPK*ENNFNPDECQFCELPDGSL |
| Parental | VINARNQNNYHCHCRIVLRSYDACDTLRPRDVTFDPELIDPVGD-AWAVATSSGIVFFSNPGRLKL-VNL |
| VIN..N.NNYHCHC.IVL.SY..CDTLRPR.VTFDPELIDP.G..A.A.ATSSGIVF.SNP......VNL | |
| Retrocopy | VINTQNKNNYHCHCQIVLHSYYICDTLRPRNVTFDPELIDPRGS>AGAAATSSGIVFPSNPVHPEFQVNL |
| Parental | TLRWSFSNGTSWRKETVQLWPGPSGYSSLAAVEGSMDGKEQTPQLYVLYEKGR-NRYTESISVAKVSVYG |
| .L.W.FS.GTS..KE.VQL.P.P.GYS......G...G......L..LYEK.....YTESI..AKVS.YG | |
| Retrocopy | ILHWNFSGGTS*QKEMVQLCPVPTGYS--SGSPGGQHG-QRGAALPLLYEKDQ<DHYTESIPMAKVSMYG |
| Parental | TL |
| TL | |
| Retrocopy | TL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_799 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tarsius syrichta | ENSTSYG00000001850 | 1 retrocopy |
retro_tsyr_799 ,
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