RetrogeneDB ID: | retro_tsyr_571 | ||
Retrocopy location | Organism: | Tarsier (Tarsius syrichta) | |
| Coordinates: | scaffold_142076:3683..4613(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | KRT36 | ||
| Ensembl ID: | ENSTSYG00000013056 | ||
| Aliases: | None | ||
| Description: | keratin 36 [Source:HGNC Symbol;Acc:6454] |
Retrocopy-Parental alignment summary:
>retro_tsyr_571
AGCGAGAAGGAGACCATGCAGGAGCTGAACGACCGCCTGGCCTCCTACCTGGAGAGAGTGAGGAGCCTGGAGACCGAGAA
CTGGAGGTTAGAGAGCAAAATCCGGGAGCACCTGGAGAAGAAGGGACCCCAGGTCAGAGACTGGGAACATTATTTCAAGA
CCATCGAGGACCTGAGGGCTCAGATCTTTGCAACTTCTGTGGACAATGCCCGCGTCGTTCTGCAGATAGACAATGCCCGT
CTTGCTGCTGATGACTTTAGAGTCAAGTATGAGACAGAGCTGGCCACGCGCCAGTCCGTGGAGAGCGACATCCATGGGCT
CTGCAAGGTCATCGATGACACCAATGTCACCCGGCTGCAGCTGGAGACAGAGATCGAGGCCCTCAAGGAAGAGCTGCTCT
TCATGAAGAATCATGAGGAGGAAGTAAAAGGCCTACAAGCGCAGATTGCCAGCTCTGGGTTGACCGTGGAGGTAGATGCC
CCCAAATCTCAGGACCTCAGCAAGATCATGGCAGACATCCGGGCCCAGTATGATGAGCTGGCTCAGAAGAACCGAGAGGA
GCTGGACAAGTACTGGTCGCAGCAGATTGAGGAGAGCACCACAGTGGTCACCACGCAGTCTGCTGAGATTGGAGCTGCAG
AGATGACGCTCACAGAGCTGAAACGTACAGCGCAGTCCTTGGAGATTGACCTGGACTCCATGAGAAACCTGAAGGCCAGC
TTGGAGAGCAGCCTGAGAGAAGCGGAGACCCGCTACACCATGCAGATGGAGCAGCTCAATGGCAACCTGCTGCACCTGGA
GTCTGAGCTGGCACAGACCCGGAGAGAGGGCCAGCGCCAGGCCCAGGAGTACAAGTCCCTACTGAACATCAAGGTCAAGC
TGGAGGCTGAGATAGCCACCTACCGCCGCCTACTAGAAGATGGAGAAGAC
ORF - retro_tsyr_571 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 50.64 % |
| Parental protein coverage: | 76.92 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | SEKETMQFLNDRLASYLEKVRQLERENAELEGRIREWYESQIPYICPDYQSYFKTIEDFQQKILLTKSEN |
| SEKETMQ.LNDRLASYLE.VR.LE.EN..LE..IRE..E...P....D...YFKTIED....I..T...N | |
| Retrocopy | SEKETMQELNDRLASYLERVRSLETENWRLESKIREHLEKKGPQV-RDWEHYFKTIEDLRAQIFATSVDN |
| Parental | ARLVLQIDNAKLAADDFRTKYETELSLRQLVEADINGLRRILDELTLCKADLETQVESLKEELMCLKKNH |
| AR.VLQIDNA.LAADDFR.KYETEL..RQ.VE.DI.GL....D........LET..E.LKEEL...K.NH | |
| Retrocopy | ARVVLQIDNARLAADDFRVKYETELATRQSVESDIHGLCKVIDDTNVTRLQLETEIEALKEELLFMK-NH |
| Parental | EEEVSALRCQLGDR-LNVEVDAAPPVDLNKILDDMRCQYETLVENNHRDVEAWFNTQTEELNQQVVSSSE |
| EEEV..L..Q.....L.VEVDA....DL.KI..D.R.QY..L...N..........Q.EE....V...S. | |
| Retrocopy | EEEVKGLQAQIASSGLTVEVDAPKSQDLSKIMADIRAQYDELAQKNREELDKYWSQQIEESTTVVTTQSA |
| Parental | QLQCCQTEIIELRRTVNALEIELQAQQSMRNSLESTLAETEARYSSQLAQMQGLIGNVEAQLAEIRCDLE |
| ..........EL.RT...LEI.L........SLES.L.E.E.RY..Q..Q..G.....E..LA..R.... | |
| Retrocopy | EIGAAEMTLTELKRTAQSLEIDLDSMRNLKASLESSLREAETRYTMQMEQLNGNLLHLESELAQTRREGQ |
| Parental | RQNQEYQVLLDVKARLENEIATYRRLLE-GED |
| RQ.QEY..LL..K..LE.EIATYRRLLE.GED | |
| Retrocopy | RQAQEYKSLLNIKVKLEAEIATYRRLLEDGED |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_571 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tarsius syrichta | ENSTSYG00000013056 | 1 retrocopy |
retro_tsyr_571 ,
|
| Tarsius syrichta | ENSTSYG00000014310 | 1 retrocopy |