RetrogeneDB ID: | retro_tsyr_497 | ||
Retrocopy location | Organism: | Tarsier (Tarsius syrichta) | |
| Coordinates: | scaffold_128275:2490..2862(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | TRBV25-1 | ||
| Ensembl ID: | ENSTSYG00000013116 | ||
| Aliases: | None | ||
| Description: | T cell receptor beta variable 25-1 [Source:HGNC Symbol;Acc:12205] |
Retrocopy-Parental alignment summary:
>retro_tsyr_497
GGTGGCCTGCTTTTTCACTGTCTCTGTCCTTCTCTCACAGGCCTCATGGATACAAAAGTAACACAGACCCCAAGATATCT
GGTTAAAAGGATGGGAGAGAACGTTTTGCTGGAATGTTTACAGCATATGGACCATGAAAGAATGTACTGGTATCGACAAG
ACCCAGGTCTGGGGCTACGGCTGATCTATTTCTCATATAATGTTGACAGTAATGAGAAAGGAGATGTCCCTGAGGGGTAC
AGTGTCTCTAGGAAGAAGAAGGAAAATTTCTCCCTGATTCTGGAGTCTGCCAACACCAACCAGACATCTGTGTACCTGTG
CACCAGCAGTTTATCCGCAGCACTGCGCAGTCACATCCTCTCTGCACAAAAA
ORF - retro_tsyr_497 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 51.59 % |
| Parental protein coverage: | 98.44 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | GSMLLCCVVFCILGVGTMDAGVTQTPRNRITKTGGNITLECSQTMGHIQMYWYRQDPGLGLQLIYYSLGV |
| G..L..C...C....G.MD..VTQTPR......G.N..LEC.Q.M.H..MYWYRQDPGLGL.LIY.S..V | |
| Retrocopy | GGLLFHCL--CPSLTGLMDTKVTQTPRYLVKRMGENVLLECLQHMDHERMYWYRQDPGLGLRLIYFSYNV |
| Parental | NITEKGEFSYASTVSRIRKEHFPLILESASPSHTSQYLCASSDHTVLYEHLHFAQK |
| ...EKG.......VSR..KE.F.LILESA....TS.YLC.SS....L..H...AQK | |
| Retrocopy | DSNEKGDVPEGYSVSRKKKENFSLILESANTNQTSVYLCTSSLSAALRSHILSAQK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_497 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tarsius syrichta | ENSTSYG00000013116 | 1 retrocopy |
retro_tsyr_497 ,
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