RetrogeneDB ID: | retro_tsyr_423 | ||
Retrocopy location | Organism: | Tarsier (Tarsius syrichta) | |
| Coordinates: | scaffold_114339:0..411(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ROPN1L | ||
| Ensembl ID: | ENSTSYG00000013823 | ||
| Aliases: | None | ||
| Description: | rhophilin associated tail protein 1-like [Source:HGNC Symbol;Acc:24060] |
Retrocopy-Parental alignment summary:
>retro_tsyr_423
ATGCCTCTTCCCGACACCATGTTCTGCGCGCAGCAGATCCCCATTCCCCCGGAGCTGCTGGACATCCTGAAGCAGTTCAC
CAAGGCCGTCATCCGCACTCAACCCACCGACGTGCTGCGGTGGTCCGTGGGATATTTTTCAGCTTTGTCCAGAGGAGAGC
CACTTCCTGTAAAGGACAGACTCGAATTGCCCGTGGCCACTCAGAAGACAGACACAGGCCTGACTCGAGGGTTCCTTAAA
GTTTTGCACAAGCAGTGCAACCACATGCAATACGTGGAATTAGCGGATCTTAAGCACAAGTGGAAAAACCTATGCCTGCC
AGTAGAAAAATTCAAAGCTCTCTTAGAATTGGATCCTCACGAAAACATAACTGGGTGGATAAATTTTTTAGCGCTTGGCT
GTAGCATGCTA
ORF - retro_tsyr_423 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 92.7 % |
| Parental protein coverage: | 60.09 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MPLPDAMFCAQQIPIPPELPDILKQFTKAAIRTQPTDVLRWSAGYFSALSRGEPLPIKDRLELPVATQKT |
| MPLPD.MFCAQQIPIPPEL.DILKQFTKA.IRTQPTDVLRWS.GYFSALSRGEPLP.KDRLELPVATQKT | |
| Retrocopy | MPLPDTMFCAQQIPIPPELLDILKQFTKAVIRTQPTDVLRWSVGYFSALSRGEPLPVKDRLELPVATQKT |
| Parental | DTGLTQGLLKVLHKQCNHMQYVELADLKHKWKNLCLPVEKFKALLELDPHENIIEWIKFLALGCSML |
| DTGLT.G.LKVLHKQCNHMQYVELADLKHKWKNLCLPVEKFKALLELDPHENI..WI.FLALGCSML | |
| Retrocopy | DTGLTRGFLKVLHKQCNHMQYVELADLKHKWKNLCLPVEKFKALLELDPHENITGWINFLALGCSML |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_423 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tarsius syrichta | ENSTSYG00000013823 | 3 retrocopies |
retro_tsyr_423 , retro_tsyr_701, retro_tsyr_981,
|