RetrogeneDB ID: | retro_tsyr_389 | ||
Retrocopy location | Organism: | Tarsier (Tarsius syrichta) | |
| Coordinates: | scaffold_108477:594..1929(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MAN1A1 | ||
| Ensembl ID: | ENSTSYG00000012261 | ||
| Aliases: | None | ||
| Description: | mannosidase, alpha, class 1A, member 1 [Source:HGNC Symbol;Acc:6821] |
Retrocopy-Parental alignment summary:
>retro_tsyr_389
AAAATTAAAGAGATGATGAAACATGCCTGGGATAATTATAGGACATATGGGTGGGGACATAATGAACTCAGGCCTATTGC
AAGGGAAGGATACTCCACTAAAATATTTGGAAGTTCACAGTTGGGTGCTACCATAGTAGATGCTTTGGATACCCTTTACA
TCATGGGACTTCACGATGAATTCCTAGATGCACAAAAATGGGTTGAAGAAAACCTTGATTTCAGTGTGAATTCAGAGGTG
TCCGTGTTTGAAGTCAACATTCGATTTATTGGAGGCCTGCTTGCTGCATATTACCTTTCAGGAGAAGAGATATTCAAGGT
TAAAGCAGTGCAGTTGGCTCAGAAACTCCTTCCCGCCTTCAACACACCTACTGGGATTCCTTGGGCAATGGTGAATTTGA
AAAGTGGAATAGGATGGAACTGGAGCTGGGCCTCTGCAGGCAGCAGCATTCTGGCTGAATTTGGGACTCTGCACATGGAG
TTCGTCCACCTCAGCTACTTGACGGGAGACCTGGTTTACTACAAGAAGGTCATGCACATTCGGAAACTACTTCAGAAAAT
GGATCGTCCAAATGGCCTTTATCCAAATTATTTGAACCCAAGAACAGGGCGCTGGGGTCAGTATCATATATCCGTTGGTA
GTCTGGGAGACAGTTTTTATGAGTACTTGCTGAAAGCATGGTTGATGTCAGACAAAACAGACTATGAGGCAAGGAAGATG
TACGATGATGCCATCGAGGCTATAGAAAAACATCTTATTAAGAAATCCCATGGAGGTCTTGTCTTTATTGGAGAATGGAA
GAATGGGCACTTGGAAAAGAAGATGGAACACTTGGCCTGCTTTACTGGGGGAATGTTTGCACTAGGAGCAGATGGTTCCA
GAACAGATAAAGCTGGTCACTATTTAGAGCTAGGGGCGGAAATTGCACGCACATGTCATGAGTCATATGACAGAACTGCA
TTAAAGCTAGGTCCTGAATCATTCAAGTTTGATGGTGCAGTGGAGGCTGTGGCTGTCCGGCAGGCTGAAAAGTATTATAT
CCTCCGTCCAGAAGTAATTGAAACCTACTGGTACCTATGGCGATTCACTCACAATCCCAAATACAGGCAGTGGGGCTGGG
AAGCAACACTGGCCATTGAAAAGTATTGCCGAGTCAGTGGCGGGTTTTCTGGAGTTAAGGATGTATATTCCTCTACTCCT
ACACATGATGATGTACAGCAGAGCTTCTTTCTTGCTGAAACATTAAAATATTTGTATCTGCTCTTCTCCGATGATGACCT
TTTACCTTTAGACCACTGGGTGTTTAATACAGAGGCTCACCCTCTGCCTGTGTTA
ORF - retro_tsyr_389 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 70.34 % |
| Parental protein coverage: | 93.67 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | EITWMMKHAWNNYKSYAWGLNELKPISKEGHSSSLFGNIK-GATIVDALDTLFIMEMKDEFQEAKSWIEE |
| .I..MMKHAW.NY..Y.WG.NEL.PI..EG.S...FG....GATIVDALDTL.IM...DEF..A..W.EE | |
| Retrocopy | KIKEMMKHAWDNYRTYGWGHNELRPIAREGYSTKIFGSSQLGATIVDALDTLYIMGLHDEFLDAQKWVEE |
| Parental | NXXXXXNAEISVFEVNIRFVGGLLSAYYLSGEEIFRKKAVELGIKLLPAFHTPSGIPWALLNMKSGIGRN |
| N.....N.E.SVFEVNIRF.GGLL.AYYLSGEEIF..KAV.L..KLLPAF.TP.GIPWA..N.KSGIG.N | |
| Retrocopy | NLDFSVNSEVSVFEVNIRFIGGLLAAYYLSGEEIFKVKAVQLAQKLLPAFNTPTGIPWAMVNLKSGIGWN |
| Parental | WPWASGGSSILAEFGTLHLEFMHLSHLSGNPIFAEKVMNIRTVLNKLEKPQGLYPNYLNPSSGQWGQHHV |
| W.WAS.GSSILAEFGTLH.EF.HLS.L.G......KVM.IR..L.K...P.GLYPNYLNP..G.WGQ.H. | |
| Retrocopy | WSWASAGSSILAEFGTLHMEFVHLSYLTGDLVYYKKVMHIRKLLQKMDRPNGLYPNYLNPRTGRWGQYHI |
| Parental | SVGGLGDSFYEYLLKAWLMSDKTDLEAKKMYFDAIQAIETHLIRKSSSGLTYIAEWKGGLLEHKMGHLTC |
| SVG.LGDSFYEYLLKAWLMSDKTD.EA.KMY.DAI.AIE.HLI.KS..GL..I.EWK.G.LE.KM.HL.C | |
| Retrocopy | SVGSLGDSFYEYLLKAWLMSDKTDYEARKMYDDAIEAIEKHLIKKSHGGLVFIGEWKNGHLEKKMEHLAC |
| Parental | FAGGMFALGADGAPEGLAQHYLELGAEIARTCHESYNRTFMKLGPEAFRFDGGVEAIATRQNEKYYILRP |
| F.GGMFALGADG.....A.HYLELGAEIARTCHESY.RT..KLGPE.F.FDG.VEA.A.RQ.EKYYILRP | |
| Retrocopy | FTGGMFALGADGSRTDKAGHYLELGAEIARTCHESYDRTALKLGPESFKFDGAVEAVAVRQAEKYYILRP |
| Parental | EVVETYLYMWRLTHDPKYRKWAWEATEALESHCRVNGGYSGLRDVYLLHESYDDVQQSFFLAETLKYLYL |
| EV.ETY.Y.WR.TH.PKYR.W.WEAT.A.E..CRV.GG.SG..DVY......DDVQQSFFLAETLKYLYL | |
| Retrocopy | EVIETYWYLWRFTHNPKYRQWGWEATLAIEKYCRVSGGFSGVKDVYSSTPTHDDVQQSFFLAETLKYLYL |
| Parental | IFSDDDLLPLEHWIFNTEAHLLPIL |
| .FSDDDLLPL.HW.FNTEAH.LP.L | |
| Retrocopy | LFSDDDLLPLDHWVFNTEAHPLPVL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_389 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tarsius syrichta | ENSTSYG00000012261 | 1 retrocopy |
retro_tsyr_389 ,
|