RetrogeneDB ID: | retro_tsyr_30 | ||
Retrocopy location | Organism: | Tarsier (Tarsius syrichta) | |
| Coordinates: | scaffold_472225:11..1148(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSTSYG00000005768 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | RCBTB2 | ||
| Ensembl ID: | ENSTSYG00000007199 | ||
| Aliases: | None | ||
| Description: | regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 [Source:HGNC Symbol;Acc:1914] |
Retrocopy-Parental alignment summary:
>retro_tsyr_30
TTTGGGAATGGGACCACCAACCAAGGCATTGCTCCCATCCAAGTCTGTACCAACCTCTTGATCAAGCAAGTGGTTGAAGT
CGCTTGTGGCTCCCATCATTCAATGGCTCTGGCAGCTGACGGAGAGGTATTTGCTTGGGGCTATAATAACTGTGGCCAAG
TGGGATCAGGATCTACAGCAAATCAGCCAACTCCTCGAAAAGTTACAAACTGTTTGCATATTAAGAGAGTGGTTGGCATT
GCCTGCGGTCAGACCTCGTCCATGGCTGTTCTGGACAATGGTGAGGTATATGGCTGGGGTTACAACGGCAATGGTCAGCT
GGGCTTGGGCAATAATGGCAACCAGCTGACGCCTGTGAGAGTGGCAGCTTTGCACAGTGTGTGTGTGAACCAGATTGTCT
GCGGCTATGCACATACCCTAGCACTAACAGATGAGGGCTTGCTCTATGCCTGGGGAGCTAACACATATGGGCAGCTGGGA
ACTGGCAATAAAAATAACCTGCTAAGCCCAGCACACATCATGGTGGAGAAAGAAAGGGTAGTGGAGATCGCAGCCTGTCA
CTCTGCCCATACGTCTGCTGCCAAGACCCAAGGTGGGCATGTGTATATGTGGGGCCAGTGCCGAGGCCAGTCGGTGATCC
TCCCTCATCTCACCCACTTTTCCTGCACGGACGATGTGTTCGCCTGCTTCGCCACCCCTGCTGTCTCGTGGCGCCTCCTC
TCTGTGGAGCATGAAGACTTTTTAACAGTCGCAGAGTCACTGAAGAAAGAATTTGATAGTCCAGAAACTGCTGATCTGAA
GTTTCAAATTGATGGGAAATATATTCATGTCCATAAAGCTGTTTTGAAAATCAGGTGTGAGCACTTTCGATCCATGTTCC
AGTCATATTGGAATGAGGATATGAAGGAAGTGATAGAAATCGACCAATTTTCTTACCCAGTGTATCGTGCCTTTCTCCAG
TACCTCTACACAGACACCGTTGACCTGCCGCCAGAAGATGCTATAGGTCTTTTGGATTTGGCGACATCTTATTGTGAAAA
CAGACTGAAAAAACTTTGTCAGCACATTATCAAGCGAGGAATTACTGTGGAGAATGCCTTTTCATTATTCTCTGCTGCAG
TCCGATATGATGCGGAG
ORF - retro_tsyr_30 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 75.62 % |
| Parental protein coverage: | 55.27 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | GNGTTNHGLVPCHISTNLSNKQVTEVACGSYHSLVLTSDGEVFAWGYNNSGQVGSGSTVNQAIPRRVTGC |
| GNGTTN.G..P....TNL..KQV.EVACGS.HS..L..DGEVFAWGYNN.GQVGSGST.NQ..PR.VT.C | |
| Retrocopy | GNGTTNQGIAPIQVCTNLLIKQVVEVACGSHHSMALAADGEVFAWGYNNCGQVGSGSTANQPTPRKVTNC |
| Parental | LQNKVVMNIACGQMCSMAVVDTGEVYVWGYNGNGQLGLGSSGNQPTPCRVAALQGIHVQKVACGYAHTLV |
| L..K.V..IACGQ..SMAV.D.GEVY.WGYNGNGQLGLG..GNQ.TP.RVAAL....V....CGYAHTL. | |
| Retrocopy | LHIKRVVGIACGQTSSMAVLDNGEVYGWGYNGNGQLGLGNNGNQLTPVRVAALHSVCVNQIVCGYAHTLA |
| Parental | LTDEGQVYAWGANSYGQLGTGNKSNQSYPTPVIVEKDRVIEIAACHSAHTSAAKTQGGHVYMWGQCRGQS |
| LTDEG..YAWGAN.YGQLGTGNK.N...P....VEK.RV.EIAACHSAHTSAAKTQGGHVYMWGQCRGQS | |
| Retrocopy | LTDEGLLYAWGANTYGQLGTGNKNNLLSPAHIMVEKERVVEIAACHSAHTSAAKTQGGHVYMWGQCRGQS |
| Parental | VILPHLTHFSCTDDVFACFATPAVSWRLLSVEPDDHLTVAESLKREFDNPDTADLKFLVDGKYIYAHKVL |
| VILPHLTHFSCTDDVFACFATPAVSWRLLSVE..D.LTVAESLK.EFD.P.TADLKF..DGKYI..HK.. | |
| Retrocopy | VILPHLTHFSCTDDVFACFATPAVSWRLLSVEHEDFLTVAESLKKEFDSPETADLKFQIDGKYIHVHKAV |
| Parental | LKI |
| LKI | |
| Retrocopy | LKI |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_30 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Otolemur garnettii | ENSOGAG00000007469 | 1 retrocopy | |
| Tarsius syrichta | ENSTSYG00000007199 | 1 retrocopy |
retro_tsyr_30 ,
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