RetrogeneDB ID: retro_tsyr_2165

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_98212:4624..5740(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ANKRD6
• Ensembl ID: ENSTSYG00000014616
• Aliases: None
• Description: ankyrin repeat domain 6 [Source:HGNC Symbol;Acc:17280]

Sequence

>retro_tsyr_2165
GGGGACCAGACCGCCTTGCACCAGGCCACGATGGTGGGGAACGCGGAGATCATTGCAGTGCTCATCCAGGAAGGGTGTGC
CCTGGACAGACAAGACAAGGATGGGAACACAGCTTGGCATGAAGCATCCTGGCATGGCTTCAGCCAGTCAGCCAAGCTGC
TCGTCAAAGCAGGTGCCAACGTGCTTGCCAGGAACAATGCAGGGAATACGGCCCTGCACCTGGCCTGCCAGAATAGCCAC
TCCCAGAGCACGCGTTTACTCCTGCTGGACGGGTCCTGCATCGACCTCTAAAACAATGTGGGCGATACCTGTTTGCACGT
TGCTGTACACTATAACCACTTGCCCATCATTAGGCTGCTCCTCAGTGCTTTCCGTTCTGTCCATGAAAAGAACCAGGCTG
GAGACACAGTACTGCACATTGCTGCTGCCCTAAACCACAAGAAGGTGGTTAAAATCTCACTGGAAGCTGGAGCGGATGCA
ACCATTGTGAATAATGCAGGCCAGACTCTGCTGGAGACGGCCCGCTACCACAACAATCTGGAGGTTGCTCTTCTCACCAA
AGCTCCCCAGGTCTTGCGCTTCAGTCCTTGGGAAAGCCTGAGGAAAAAGAGGGAGAGGCTCAAGGAGGAGCAGAAGGCCC
AGTTGGTGCCAAGAGATGAGGTGGCACAAAGCAAGAGCAGTGTCTTGGCAGGAGACACCCCCAGCAGGGAACAGGCTGTG
CTCAGAGAAGAAGAGGCCAGAGATTTCCTCTCAGCGTCCCCAGAGCCCAGAGCCAAGGAGAACAGGAGGAGAAAGTCAAG
GCCCAAGGTGTCAGCAGTTTCTGACCCCACCCCGCCAGCCGACCAACAGCCTGGACGCCAGAAGAACCTGCACGCTCACG
ATGACCGCTGCTCATCCCTGCCCCCGCCCCACGAGTTCAGAGCTTACCGGCTCTGCACGCTGTACTGGGGCAAGGACGGG
AAGGTGATGCAGGCACCAATAAATGGCTGTCGATGTGAGCCTCTGGTCAACAAGCAAGAGAACCTGCTGGAGGCTGCCGT
GGAGGACGACAGAGCAGAGCTGGGGTCGGTCCAGGTCAAGATGAACACAAAGTTGGGCCACATGGAGAGCAAGACC

Alignment

ORF - retro_tsyr_2165 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.32 %
• Parental protein coverage: 62.29 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GGQTALHRATVAGNTEVIAALVQEGCALDRQDKDGNTALHEASWHGFSQSAKLLVKAGANVLARNKAGNT
          G.QTALH.AT..GN.E.IA.L.QEGCALDRQDKDGNTA.HEASWHGFSQSAKLLVKAGANVLARN.AGNT
Retrocopy GDQTALHQATMVGNAEIIAVLIQEGCALDRQDKDGNTAWHEASWHGFSQSAKLLVKAGANVLARNNAGNT

Parental  ALHLACQNSHSQSTRVLLLGGSRADLKNNVGDTCLHVAARYNHLPVVRLLLSAFCSVHEKNQ-GDTALHI
          ALHLACQNSHSQSTR.LLL.GS..DL.NNVGDTCLHVA..YNHLP..RLLLSAF.SVHEKNQ.GDT.LHI
Retrocopy ALHLACQNSHSQSTRLLLLDGSCIDL*NNVGDTCLHVAVHYNHLPIIRLLLSAFRSVHEKNQAGDTVLHI

Parental  AAALNHKKVVKISLEAGADATIVNNAGQTLLETARYHNNLEVALLTKAPQVLRFSPWGNLRKKRERLKEE
          AAALNHKKVVKISLEAGADATIVNNAGQTLLETARYHNNLEVALLTKAPQVLRFSPW..LRKKRERLKEE
Retrocopy AAALNHKKVVKISLEAGADATIVNNAGQTLLETARYHNNLEVALLTKAPQVLRFSPWESLRKKRERLKEE

Parental  RKAQLVPRDEVAQSKSSVSARDTPSREQAVLREE-ARDFLSASPEPRAKESRRRKSRSKVSAVSDPTPPA
          .KAQLVPRDEVAQSKSSV.A.DTPSREQAVLREE.ARDFLSASPEPRAKE.RRRKSR.KVSAVSDPTPPA
Retrocopy QKAQLVPRDEVAQSKSSVLAGDTPSREQAVLREEEARDFLSASPEPRAKENRRRKSRPKVSAVSDPTPPA

Parental  DQQPGRQKNLHAHDHRCSSPPPPHEFRAYWLCTLYRGKDGKVMKAPINGCRCEPLVNKRENLLEAAVEDD
          DQQPGRQKNLHAHD.RCSS.PPPHEFRAY.LCTLY.GKDGKVM.APINGCRCEPLVNK.ENLLEAAVEDD
Retrocopy DQQPGRQKNLHAHDDRCSSLPPPHEFRAYRLCTLYWGKDGKVMQAPINGCRCEPLVNKQENLLEAAVEDD

Parental  RAELGSVQVKMNTKLGHMESKT
          RAELGSVQVKMNTKLGHMESKT
Retrocopy RAELGSVQVKMNTKLGHMESKT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_2165 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000014616	3 retrocopies	retro_tsyr_1127, retro_tsyr_1954, retro_tsyr_2165 ,