RetrogeneDB ID: | retro_tsyr_1952 | ||
Retrocopy location | Organism: | Tarsier (Tarsius syrichta) | |
| Coordinates: | scaffold_71392:6257..6851(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | SRSF11 | ||
| Ensembl ID: | ENSTSYG00000008728 | ||
| Aliases: | None | ||
| Description: | serine/arginine-rich splicing factor 11 [Source:HGNC Symbol;Acc:10782] |
Retrocopy-Parental alignment summary:
>retro_tsyr_1952
GAGTCACCTTTGCCAGTCTCATCTCGTGTCTGCTTTGTTAAGTTCCATGATCCGGACTCAGCAGTTGTGGCACAGTATCT
GACAAACACTGTATTCGTTGACAGAGCTTTGATAGCCGTACCATATGCAGAAGGAGTTATTCCTGATGAGACTAAGGCTT
TGTCTCTGTTGCCACCAGCTAATGCAGTGGCAGGTCTTCTGGCTGGTGGTGGACTCCTGCCTACTCCTAACCCACTTACC
CAGATTGGCGCTGTTCCACCGGCTGCTTTGGGAGCTCCCACTCTTGATCCTGCCCTTGCTGCACTTGGGCTTCCTGGAGC
TAACTTGAACTCTCAGTCTCTTGCTGCAGATCCGTTGCTGAAGCTTATGAGTACTGTTGATCCCAAGTTGAGTCATGTGG
CTGCTGGTCTTGTTTCACCAAGTCTGAAATCGGATACCTCTAGTAAAGAAACAGAGGAAGCTATGGAGAGAGTCCGAGAA
GCACAGTCCCTGATCTCTGCTGCTATAGAACCAGATAAAAAAGAAGAAAAAAGAAGGCAATCAAGATCAAGATCACCTTC
TAGGAGGAGAAGGACTCCCTCATCTTCAAGACAC
ORF - retro_tsyr_1952 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 89.39 % |
| Parental protein coverage: | 51.16 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | DSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPGG |
| .SPLPVSSRVCFVKFHDPDSAVVAQ.LTNTVFVDRALI.VPYAEGVIPDETKALSLL.PANAVAGLL.GG | |
| Retrocopy | ESPLPVSSRVCFVKFHDPDSAVVAQYLTNTVFVDRALIAVPYAEGVIPDETKALSLLPPANAVAGLLAGG |
| Parental | GLLPTPNPLTQIGAVPLAALGAPTLDPALAALGLPGANLNSQXXAADQLLKLMSTVDPKLNHVAAGLVSP |
| GLLPTPNPLTQIGAVP.AALGAPTLDPALAALGLPGANLNSQ..AAD.LLKLMSTVDPKL.HVAAGLVSP | |
| Retrocopy | GLLPTPNPLTQIGAVPPAALGAPTLDPALAALGLPGANLNSQSLAADPLLKLMSTVDPKLSHVAAGLVSP |
| Parental | SLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRH |
| SLKSDTSSKE.EEAM.RVREAQSLISAAIEPD........SRSRS.SRRRRTPSSSRH | |
| Retrocopy | SLKSDTSSKETEEAMERVREAQSLISAAIEPDXXXXXXXQSRSRSPSRRRRTPSSSRH |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_1952 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tarsius syrichta | ENSTSYG00000008728 | 1 retrocopy |
retro_tsyr_1952 ,
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