RetrogeneDB ID: retro_tsyr_1763

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_574882:592..890(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSTSYG00000010813
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: POP5
• Ensembl ID: ENSTSYG00000006138
• Aliases: None
• Description: processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae) [Source:HGNC Symbol;Acc:17689]

Sequence

>retro_tsyr_1763
GCTGCTTGCTTAATTGGCTTTGTGGTTCAATACCTCAATGCCTATACTGGAATAGTGCTACTTCAATGCAGAAAGAAATT
CTACCAGCTTGTGTGGTCAGCTCTTCCCTTCATCACATACTTGGAGAGCAAAGGACACCATTACCCTTTTTTTTCCAACA
TGTTACATGTGGGAGGTACAATTAGAACATGTCAGAAGTTCCTAATTCAGTACAACAGAAACTGTTGTTGATCTTGTTGC
AGAACTGCACTTTTGACAGAGAATGGAAGCTATCCAGAAGTCAGTTACAAGAAGTTGT

Alignment

ORF - retro_tsyr_1763 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.41 %
• Parental protein coverage: 59.17 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  AACSIGFAVRYLNAYTGIVLLRCRKEFYQLVWSALPFITYLENKGHRYPCFFNTLYVGGTIRTCQKFLIQ
          AAC.IGF.V.YLNAYTGIVLL.CRK.FYQLVWSALPFITYLE.KGH.Y....N.L.VGGTIRTCQKFLIQ
Retrocopy AACLIGFVVQYLNAYTGIVLLQCRKKFYQLVWSALPFITYLESKGHHYXXXXNMLHVGGTIRTCQKFLIQ

Parental  YNR-RQLLILLQNCTDEGE-REAIQKSVTRSC
          YNR...LLILLQNCT...E..EAIQKSVTRSC
Retrocopy YNR<KLLLILLQNCTFDRE<MEAIQKSVTRSC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1763 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000012668	1 retrocopy	retro_dnov_2643,
Echinops telfairi	ENSETEG00000009283	1 retrocopy	retro_etel_569,
Tarsius syrichta	ENSTSYG00000006138	1 retrocopy	retro_tsyr_1763 ,