RetrogeneDB ID: | retro_tsyr_1735 | ||
Retrocopy location | Organism: | Tarsier (Tarsius syrichta) | |
| Coordinates: | scaffold_562726:553..918(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | SAPCD1 | ||
| Ensembl ID: | ENSTSYG00000001565 | ||
| Aliases: | None | ||
| Description: | suppressor APC domain containing 1 [Source:HGNC Symbol;Acc:13938] |
Retrocopy-Parental alignment summary:
>retro_tsyr_1735
GTGCAGGCTTCCTACACAGTCTGCTGCTGCCACTGGGGACAAGCCGCCAAGACCTAGGGGCCCAGAGCTTCTTTCTCTGG
CTGCAGAGAATGCAGGCTCTGGAGAGAGAACAGGATACCCTGTGACAGCGACTGGAGCTGCTAGAACATGGCCAGGCCTG
GTTTGAAGACCGTCTGAGGAAGGCACAGTGACAGCAGCTGCACCTGGGGGCCCTTGGTGAGAATTTTCTAACAGATTTGC
ACTCAGAGTCTTGTGGCCCCCAGTTAGCCCAGATCCAAAAGGTGAACATCTGTTTGCAGAATCTGATTCAGGAGAAGTTC
TCCCCAAGTCCATTCAATAAGGCTAGTTCCCGCACCACCTAGGAC
ORF - retro_tsyr_1735 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 90.24 % |
| Parental protein coverage: | 73.05 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | VQAPYTV-LLLPLGTSRQDPGAQSFFLWLQRMQALERQQDALWQGLELLEHGQAWFEDRLREAQQQQLHL |
| VQA.YTV.LLLPLGTSRQD.GAQSFFLWLQRMQALER.QD.L.Q.LELLEHGQAWFEDRLR.AQ.QQLHL | |
| Retrocopy | VQASYTV<LLLPLGTSRQDLGAQSFFLWLQRMQALEREQDTL*QRLELLEHGQAWFEDRLRKAQ*QQLHL |
| Parental | GALGENFLTDLHSETCGPQLAQIQKVNICLQNLIQEKFSPSPFNKASSHTTQD |
| GALGENFLTDLHSE.CGPQLAQIQKVNICLQNLIQEKFSPSPFNKASS.TT.D | |
| Retrocopy | GALGENFLTDLHSESCGPQLAQIQKVNICLQNLIQEKFSPSPFNKASSRTT*D |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_1735 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tarsius syrichta | ENSTSYG00000001565 | 1 retrocopy |
retro_tsyr_1735 ,
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