RetrogeneDB ID: retro_tsyr_1557

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_488508:181..933(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZDHHC15
• Ensembl ID: ENSTSYG00000012575
• Aliases: None
• Description: zinc finger, DHHC-type containing 15 [Source:HGNC Symbol;Acc:20342]

Sequence

>retro_tsyr_1557
CTGATAGCTTACCATCTACCCTCTGCAGTGTTTGCCTGGTCATGCTGGAAAACTGTCTTTACATTACCAACGAATCCTTC
AAGAGAATTCCATCTCTCTCGTGCAGAGAAAGAATTGCTGGAGAGAGAGCCGAGAGGTGAAGCCATCAGGAAGTTCTTAG
GCGAGCGAGCAGCCAAAGGTCTTCCCGTCTACACCAGGACCGTGTCTGGAGCAATCCGATATTGTGACAGATGCCAACTT
AAAAGCCAGATCGCTGCCATCACTGTTCTGTCTGTGATAGATGTATATCGAAGATGGCTCATCATTGCCCGCGGATGAAC
GATTGTGTTGGATTTTCGAATTATAAATTCTTTCTCCTTTTCTTGGCTTATCCTCTGCTCTACTGCCTTTTTATTGCAGT
TACAGATTTACAGTATTTTGTCAAATTTTGGACAAATGGCCTACCTGATACTCACGCCAAGTTCCATATTATGTTTTCAT
TCCTTGCTGCAGCTATGTTTTCTGTCAGCTTGACTTCTCTGTTTGGCTATCATTGTTGGCTAGTCAGCAAAAATAAATCT
GCTTTAGAGGCATTCAGAAGTCCAGCATTTCAACATGGAACAGATAAGAACGGATCAGGCTTGGGCTTCAGTAAAAAGAT
GAGACAAGTATTTGGTGATGAGGAGAAGTACTGGTTGCTACCCATTTTTTCAAGTTTAGATGATAGCTGCTCCTTTCCAA
CTTGCCTTGTTAACCAGGATCCCGAGCAACTG

Alignment

ORF - retro_tsyr_1557 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.35 %
• Parental protein coverage: 88.65 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LILYHAIFVFFAWTYWKSIFTLPQQPNQKFHLSYTDKERYENEERPEVQKQMLVDMAKK-LPVYTRTGSG
          LI.YH.....FAW..WK..FTLP..P...FHLS...KE..E.E.R.E.....L...A.K.LPVYTRT.SG
Retrocopy LIAYHLPSAVFAWSCWKTVFTLPTNPSREFHLSRAEKELLEREPRGEAIRKFLGERAAKGLPVYTRTVSG

Parental  AVRFCDRCHLI-KPDRCHHCSVCAMCVLKMDHHCPWVNNCIGFSNYKFFLQFLAYSVLYCLYIATTVFSY
          A.R.CDRC.L..KPDRCHHCSVC..C..KM.HHCP..N.C.GFSNYKFFL.FLAY..LYCL.IA.T...Y
Retrocopy AIRYCDRCQLK<KPDRCHHCSVCDRCISKMAHHCPRMNDCVGFSNYKFFLLFLAYPLLYCLFIAVTDLQY

Parental  FIKYWRGELPNVRSKFHVLFLLFVACMFFVSLVILFGYHCWLVGRNKTTLEAFCTPVFTSGPEKNGFNLG
          F.K.W...LP....KFH..F....A.MF.VSL..LFGYHCWLV..NK..LEAF..P.F..G..KNG..LG
Retrocopy FVKFWTNGLPDTHAKFHIMFSFLAAAMFSVSLTSLFGYHCWLVSKNKSALEAFRSPAFQHGTDKNGSGLG

Parental  FIKNIQQVFGDNKKLWLIPIGSSPGDGHSFPMRSMNESQNPL
          F.K...QVFGD..K.WL.PI.SS..D..SFP....N.....L
Retrocopy FSKKMRQVFGDEEKYWLLPIFSSLDDSCSFPTCLVNQDPEQL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1557 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000003013	1 retrocopy	retro_tsyr_998,
Tarsius syrichta	ENSTSYG00000006767	1 retrocopy	retro_tsyr_263,
Tarsius syrichta	ENSTSYG00000012575	1 retrocopy	retro_tsyr_1557 ,