RetrogeneDB ID: retro_tsyr_1479

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_4592:36528..36979(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TATDN1
• Ensembl ID: ENSTSYG00000001819
• Aliases: None
• Description: TatD DNase domain containing 1 [Source:HGNC Symbol;Acc:24220]

Sequence

>retro_tsyr_1479
CTATCAGAACAAACAAAATTACCAATGTTTCAAAAGAGTTGTCAAAACTCTCATGTTGAATTTTTGGACATAATGAAAAG
AAATAGAGATTGGTGTGTAGGGGGAATGGTCCATTCATCTGATGAAACCTCGTAAGCAGCAGCTCCTTGATTGACCTGGA
TCTTTACATAGGATTTAATGGTTGCTCAGTGAAAACTGAGGGTAATTTGGAAGTTTTTAAGTCTATAAATAGTGAAAAAT
TGATGATCAAGACAGGTGCACCTTGGTGGGAGTCAAAAGTACACATGTTGAATCAAAATATGTAAAAACTTCATTTCCTA
CCAAGAAGAAGTGGGAAAAAGGGCACTGTTTAAAAGACAGAAATGAGCCCTGCCATATAATTCAAATACTGGAGCTAATG
TCAGGAGTAAGAGATGAAGATCCAGTTGAATTAGCTAATACTGTACATAAT

Alignment

ORF - retro_tsyr_1479 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.78 %
• Parental protein coverage: 51.9 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LAEQTKLPMFLH-CRNSHAEFLDIMKRHRDRCVGGVVHSFDGTKEAAA-ALIDLGLYIGFNGCSLKTEAN
          L.EQTKLPMF...C.NSH.EFLDIMKR.RD.CVGG.VHS.D.T..AAA..LIDL.LYIGFNGCS.KTE.N
Retrocopy LSEQTKLPMFQKSCQNSHVEFLDIMKRNRDWCVGGMVHSSDETS*AAA<SLIDLDLYIGFNGCSVKTEGN

Parental  LEVLKSIPSERLMIETDAPW-CGVKSTHAGSKYVKTSFPTKKKWENGHCLKDRNEPCHIIQILEIMSAVR
          LEV.KSI.SE.LMI.T.APW..GVKSTH..SKYVKTSFPTKKKWE.GHCLKDRNEPCHIIQILE.MS.VR
Retrocopy LEVFKSINSEKLMIKTGAPW<VGVKSTHVESKYVKTSFPTKKKWEKGHCLKDRNEPCHIIQILELMSGVR

Parental  DEDPLELANSLYN
          DEDP.ELAN...N
Retrocopy DEDPVELANTVHN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1479 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Pongo abelii	ENSPPYG00000018868	1 retrocopy	retro_pabe_609,
Tarsius syrichta	ENSTSYG00000001819	1 retrocopy	retro_tsyr_1479 ,