RetrogeneDB ID: | retro_tsyr_1443 | ||
Retrocopy location | Organism: | Tarsier (Tarsius syrichta) | |
| Coordinates: | scaffold_442838:916..1192(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSTSYG00000013509 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | C11orf70 | ||
| Ensembl ID: | ENSTSYG00000000616 | ||
| Aliases: | None | ||
| Description: | chromosome 11 open reading frame 70 [Source:HGNC Symbol;Acc:28188] |
Retrocopy-Parental alignment summary:
>retro_tsyr_1443
TGTGATCCATTTCTAATTTCTGATGAGTTATGAAAAGTTTTGCTAGTGGAAGACTTGGAAAAATATGAAGTGTTCAGCCC
AACAGACAGAGAGGAGTTCCTGTTCTGCGTGTTCAAACACCTGTGCCTCGGCAGAGCCCTCTGTCAATATGAAGTCGTGC
TTAGCCCGTATCTGGAAACAGCAATGCTGATCTATAAGGACCTTGTGAGCGTTCGAAAGAATTCTCAAACCAAGAAAATA
CAAATCACCTCTTCTGTCTTTAAAGTTACAGCCTAT
ORF - retro_tsyr_1443 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 92.39 % |
| Parental protein coverage: | 57.14 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | CDPFLISDELRKVLLVEDSEKYEVFSPADREEFLFCVFKHLCLGGALCQYEDVLSPYLETAKLIYKDLVS |
| CDPFLISDEL.KVLLVED.EKYEVFSP.DREEFLFCVFKHLCLG.ALCQYE.VLSPYLETA.LIYKDLVS | |
| Retrocopy | CDPFLISDEL*KVLLVEDLEKYEVFSPTDREEFLFCVFKHLCLGRALCQYEVVLSPYLETAMLIYKDLVS |
| Parental | VRKNPQTKKIQITSSVFKVTAY |
| VRKN.QTKKIQITSSVFKVTAY | |
| Retrocopy | VRKNSQTKKIQITSSVFKVTAY |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_1443 was not experimentally validated.
Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tarsius syrichta | ENSTSYG00000000616 | 2 retrocopies |
retro_tsyr_1443 , retro_tsyr_470,
|