RetrogeneDB ID: retro_tsyr_1185

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_3408:13164..13488(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTSYG00000006221
• Aliases: None
• Description: None

Sequence

>retro_tsyr_1185
ATGAGTTGGCATGGAAGATCCACATATAGGCATGGAAGAAGAAATATGACAGAAGTTTTTCATCTGGCTGGGCCTGTGGC
TGCTTAGCAGCCCAGTGATGAAGAGCCTCAGTGAGAGGAGTCACCACCTGCAAGTCAGGATGTTACACCTGGTCAGGAGA
GAGATGAGAAAGCATCTGAGATTCAAGGGCGTGACCCAAAAGCTGCTCCCCACGAACTGTCTCAGCTAAAGACGGGCAGT
ACATGTGAAAATGAATCAGAGATCAGGGGGTCGACTCTAATAAATCTAGAGCCCTTAAAAATGCTAGAAGCAGGTGAAGA
ACAA

Alignment

ORF - retro_tsyr_1185 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 58.72 %
• Parental protein coverage: 96.36 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSWRGRSTYRPRRRNVMDVSQQTEPQV--QPSDEQPSGQEPPPASQDVTPGQEREDAKASEIPGPDPEAV
          MSW.GRSTYR..RRN...V.....P....QPSDE.P...E.PPASQDVTPGQER.D.KASEI.G.DP.A.
Retrocopy MSWHGRSTYRHGRRNMTEVFHLAGPVAA*QPSDEEPQ*EESPPASQDVTPGQER-DEKASEIQGRDPKAA

Parental  PQELSQPVSRGTSGNGSDDQG-TLTNLEPTKMPEASGGQ
          P.ELSQ.....T..N.S...G.TL.NLEP.KM.EA...Q
Retrocopy PHELSQLKTGSTCENESEIRGSTLINLEPLKMLEAGEEQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1185 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000006221	4 retrocopies	retro_tsyr_1185 , retro_tsyr_1221, retro_tsyr_1731, retro_tsyr_1793,