RetrogeneDB ID: | retro_tnig_10 | ||
Retrocopy location | Organism: | Tetraodon (Tetraodon nigroviridis) | |
| Coordinates: | 12:11949867..11950992(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSTNIG00000011489 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | npy8ar | ||
| Ensembl ID: | ENSTNIG00000013601 | ||
| Aliases: | None | ||
| Description: | neuropeptide Y receptor Y8a [Source:ZFIN;Acc:ZDB-GENE-990415-175] |
Retrocopy-Parental alignment summary:
>retro_tnig_10
TGTCGGCGCGGTGAGGTGGGCGTCGCCATGGAGCCGCAGCCCAACTCCAACCACAACCAGGCGCCGTGGAAGGAGTTCCC
CTGGGACCTGTCGGACGACTGCTCGCTGTCGGTGGGCGGCACCACCTTCCTGATCGCGGCCTACAGCGCCGTCATGGCGG
TGGGTCTCATCGGGAACTCCTGCCTGGTCTTCATCATCCTGTGGCACAAGGAGATGCGCAACGTCACCAACGTCTTCATT
GCCAACCTGTCCTGCTCCGACATCCTGATGGGCGTGGTGTGCCTGCCGGTCACCATCGTCTACACGCTGATGGACCGCTG
GGTCCTGGGAGACGCCCTGTGCAAGCTCACGCCCTTCGTCCAGTGCATCTCCGTGTCCGTGTCCGTCTTCTCGCTGGTCC
TCATCACCATGGAGCGCTACCAGCTCATCGTCCACCCCACCGGGTGGAGGCCGGTGCTGGGCCAGGCCTACCTGGCGGTG
GGGCTCACCTGGGTGGTGGCGGGCCTGGCCTCCGCGCCCTTCCTCTCCTACAGCGTGCTCACCCTGCCCTTCCAGAACCT
GAGCGTCCCCTTCCCCATCGGCGACCACCTCATCTGCATGGAGCGCTGGCCGTCGGTGGAGGCGCGGCGCGCCTACACCA
CCTCCCTGCTGGTCTTCCAGTACTTCCTCCCGCTGGCGCTCATCACCGGCTGCTACCTGCACATTTACCTGCGCCTGAGG
AGGCGGAAGGACGCGGTGGAGCGCGGGCGGAGCGCCAACCCCAAGAGGAACCGGGGCTCGGCCAGGATCAACGCCATGCT
GGTCTCCATCGTGGTGGCCTTCGCCGTCTCCTGGCTGCCGCTGAACGTCTTCAACGCCGTGTTCGACTGGCACCACGAGG
CCATCCCGTCCTGCAGCCACGACGCCATCTTCTCCTTCTGCCACCTGGCGGCCATGGCGTCCACCTGCATCAACCCCGTC
ATCTACGGCTTCCTCAACAGCAACTTCCAGAAGCAGCTGAAGGCGTCGCTGCTGCGCTGCCGCTGCTGGGGCGCCGCCGA
GAGGTACGAGAGCATCCCGCTGTCCACCGTCAGCACCGAGGTCACCAAGGGCTCCGTCCTCAGCAACGGGTCCCTGAGCG
CCAAC
ORF - retro_tnig_10 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 66.9 % |
| Parental protein coverage: | 86.38 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | IVAYSAIIAIGLLGNAGLVFIIARQQELRNVTNILIANLSCSDILMCVVCLPVTVIYTLMDRWVLGEALC |
| I.AYSA..A.GL.GN..LVFII....E.RNVTN..IANLSCSDILM.VVCLPVT..YTLMDRWVLG.ALC | |
| Retrocopy | IAAYSAVMAVGLIGNSCLVFIILWHKEMRNVTNVFIANLSCSDILMGVVCLPVTIVYTLMDRWVLGDALC |
| Parental | KVTPFVQCMSVTVSIFSLVLIALERHQLILHPTGWSPAAGHSYLAVGLTWLVACFISLPFLSFNVLTNDP |
| K.TPFVQC.SV.VS.FSLVLI..ER.QLI.HPTGW.P..G..YLAVGLTW.VA...S.PFLS..VLT..P | |
| Retrocopy | KLTPFVQCISVSVSVFSLVLITMERYQLIVHPTGWRPVLGQAYLAVGLTWVVAGLASAPFLSYSVLTL-P |
| Parental | FQNISLPANPFRDHLVCMELWPSDKHRLAYMTSLLVFQYCLPLVLVLLC----YLRIFLRLKR-RRDMLE |
| FQN.S.P..P..DHL.CME.WPS...R.AY.TSLLVFQY.LPL.L...C....YLR...R.....R.... | |
| Retrocopy | FQNLSVPF-PIGDHLICMERWPSVEARRAYTTSLLVFQYFLPLALITGCYLHIYLRLRRRKDAVERGRSA |
| Parental | RSRRTRGAQRINVMLLAIVVAFALCWLPLNVFNTLFDWHHQALPDCQHDAIFSACHLTAMASTCINPVVY |
| ...R.RG..RIN.ML..IVVAFA..WLPLNVFN..FDWHH.A.P.C.HDAIFS.CHL.AMASTCINPV.Y | |
| Retrocopy | NPKRNRGSARINAMLVSIVVAFAVSWLPLNVFNAVFDWHHEAIPSCSHDAIFSFCHLAAMASTCINPVIY |
| Parental | GFLN |
| GFLN | |
| Retrocopy | GFLN |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tetraodon nigroviridis was not studied using RNA-Seq expression data.
Tetraodon nigroviridis was not studied using ChIP-Seq data.
Tetraodon nigroviridis was not studied using EST data.
Tetraodon nigroviridis was not studied using FANTOM5 data.
retro_tnig_10 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_tnig_10 has 1 orthologous retrocopies within teleost group .| Species | RetrogeneDB ID |
|---|---|
| Takifugu rubripes | retro_trub_17 |
Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tetraodon nigroviridis | ENSTNIG00000013601 | 1 retrocopy |
retro_tnig_10 ,
|
| Takifugu rubripes | ENSTRUG00000018631 | 1 retrocopy | |
| Xiphophorus maculatus | ENSXMAG00000000370 | 1 retrocopy |