RetrogeneDB ID: retro_tbel_46

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: scaffold_116173:85386..86994(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSTBEG00000012256
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: DYRK4
• Ensembl ID: ENSTBEG00000006370
• Aliases: None
• Description: dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 [Source:HGNC Symbol;Acc:3095]

Sequence

>retro_tbel_46
ATTGGTGGCAGTAAGCACACAATGAATGATCACTTGCATGTCGGCAGCCACAGCCACGGACAGATCCAGGTTCAACAGCT
GTTTGAGGATAACAGTAACAAGCGGACAGTGCTCACGACACAACCAAATGGGCTTACAACAGTGGGCAAAGCAGGCTTGC
CGGTGGTGCCAGAACGGCAGCTGGAGAGCATCCACCGACGGCAGGGGAGCTCCACCTCTCTGAAGTCCATGGAAGGCATG
GGGAAGGTGAAAACCTCACCCATGACACCTGAACAAGCAATGAAGCAATACATGCAAAAACTAACGGCCTTTGAACACCA
CGAGATTTTCAGCTACCCTGAAATATATTTCTTGGGTCCAAATGCAAAAAAGCGTCAGGGCATGACAGGAGGGCCTAATA
ATGGTGGCTATGACGATGACCAAGGATCATACGTGCAGGTGCCCCACGATCACGTGGCTTACAGGTACGAGGTCCTCAAA
GTCATCGGGAAAGGGAGCTTCGGGCAGGTGGTCAAGGCCTATGATCACAAAGTCCACCAGCACGTGGCCCTGAAGATGGT
GCGGAACGAGAAGCGCTTCCACCGGCAGGCAGCGGAGGAGATCCGAATCCTGGAACACCTGCGGAAGCAGGACAAGGACA
ACACCATGAACGTCATCCACATGCTGGAGAATTTTACCTTCCGCAACCACATCTGCATGACGTTTGAGCTGCTGAGTATG
AACCTCTATGAGCTCATCAAGAAGAATAAATTCCAGGGCTTTAGCCTGCCTTTGGTCCGTAAGTTTGCCCACTCAATTCT
GCAGTGCTTGGATGCTTTGCACAAAAACAGAATAATTCACTGTGACCTTAAGCCCGAGAACATTTTGTTGAAGCAGCAGG
GTAGAAGTGGTATTAAAGTGATTGATTTTGGCTCCAGTTGTTATGAGCATCAACGTGTCTACACGTACATCCAGTCACGG
TTTTACCGGGCTCCAGAAGTGATCCTGGGGGCCAGGTATGGCATGCCTATTGATATGTGGAGCCTGGGCTGCATTTTGGC
AGAGCTCCTGACAGGTTACCCCCTTTTGCCTGGGGAAGACGAGGGGGACCAGCTGGCCTGTATGATTGAACTGTTGGGTA
TGCCCTCCCAGAAACTGCTGGATGCATCCAAACGAGCCAAAAATTTTGTGAGCTCCAAGGGGTATCCCCGTTACTGCACT
GTCACCACTCTCTCAGACGGCTCCGTGGTCCTCAATGGAGGCCGTTCCCGGAGAGGGAAACTGAGGGGCCCACCAGAGAG
CAGAGAGTGGGGAAATGCACTGAAGGGGTGTGACGACCCCCTATTCCTTGACTTCTTAAAGCAGTGTTTAGAATGGGATC
CTGCAGTTCGTATGACCCCCGGCCAGGCTTTACGACATCCCTGGCTGAGACGGCGGCTGCCCAAGCCTCCGACTGGGGAG
AAGACGGCAGTGAAGAGGATAACGGAGAGCGCTGGTGCTATCACATCGATTTCCAAGTTACCTCCACCTTCCAGCTCAGC
TTCCAAACTGAGGACTAATTTGGCACAAATGACGGATGCCAATGGGAATATTCAGCAGAGGACAGTGTTGCCAAAACTCG
TTAGCTGA

Alignment

ORF - retro_tbel_46 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.6 %
• Parental protein coverage: 75.69 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ALKLFKDQLSPYEQSEILGYTELWFLGLDAEKLNVTPEKFSKTSFDDEHGSYMKVLHDHIAYRYEVLEMI
          A.K.....L...E..EI..Y.E..FLG..A.K.............DD..GSY..V.HDH.AYRYEVL..I
Retrocopy AMKQYMQKLTAFEHHEIFSYPEIYFLGPNAKKRQGMTGGPNNGGYDDDQGSYVQVPHDHVAYRYEVLKVI

Parental  GKGSFGQVPKCLDHKNNELVALKIIRNKKRFHHQALVELKILEALRRKDKDNTHNVVHMKDFFYFRNHLC
          GKGSFGQV.K..DHK....VALK..RN.KRFH.QA..E..ILE.LR..DKDNT.NV.HM...F.FRNH.C
Retrocopy GKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHIC

Parental  ITFELLGINLYELMKNNSFQGFSLSIVRRFTLSVLKCLQMLYVEKIIHCDLKPENIVLYQKGQVSVKVID
          .TFELL..NLYEL.K.N.FQGFSL..VR.F..S.L.CL..L....IIHCDLKPENI.L.Q.G....KVID
Retrocopy MTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVID

Parental  FGSSCYDHQKVYTYIQSRFYRSPEVILGHPYNMAIDMWSLGCIMAELYTGYPLFPGENEVEQLACIMEVL
          FGSSCY.HQ.VYTYIQSRFYR.PEVILG..Y.M.IDMWSLGCI.AEL.TGYPL.PGE.E..QLAC..E.L
Retrocopy FGSSCYEHQRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELL

Parental  GLPPTRFIQTASRRQTFFDSKG
          G.P.........R...F..SKG
Retrocopy GMPSQKLLDASKRAKNFVSSKG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_46 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_46 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tupaia belangeri	ENSTBEG00000006370	1 retrocopy	retro_tbel_46 ,