RetrogeneDB ID: | retro_tbel_4126 | ||
Retrocopy location | Organism: | Treeshrew (Tupaia belangeri) | |
| Coordinates: | scaffold_68167:4045..4369(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ACN9 | ||
| Ensembl ID: | ENSTBEG00000006332 | ||
| Aliases: | None | ||
| Description: | ACN9 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:21752] |
Retrocopy-Parental alignment summary:
>retro_tbel_4126
GAGTTGCACTGCATTTTGCCCCCGGACCTCAAAGCCCTGGGCGACCAGTACGTGAAGGATGAATTTAGGAGACATAAAAC
CGTTGGTTCTGACGAGGCCCAGCGTTTCTTGCAGGAATGGGAGGTGTATGCAGCAGTGTTGTGACAACAAGCTAATGAAA
AAAAGACAGAATTCAACTGAAAAAGCACTTTTTGCACCTTCCTTTCAGAAAAAAAACTTAATGACTTCCGTGATGAACAA
ATTGGACATTTACAAAAGTTGATGCAAGAAGCCACTAAACCGAATAAGCAATTTAGTATTACTGAGTCTACCAAATCAAA
ATTT
ORF - retro_tbel_4126 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 86.61 % |
| Parental protein coverage: | 86.61 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | QLHRVLPPDLKALGDQYVKDEFRRHKTVGSDEAQRFLQEWEAXVYAAVLWQQANEK-RQNSTEKALFG-T |
| .LH..LPPDLKALGDQYVKDEFRRHKTVGSDEAQRFLQEWE..VYAAVL.QQANEK.RQNSTEKALF..T | |
| Retrocopy | ELHCILPPDLKALGDQYVKDEFRRHKTVGSDEAQRFLQEWE--VYAAVL*QQANEK>RQNSTEKALFA<T |
| Parental | FLSEEKLNDFRDEQIGQLQELMQEATKLNKQFSITESTKSKF |
| FLS...LNDFRDEQIG.LQ.LMQEATK.NKQFSITESTKSKF | |
| Retrocopy | FLSXXXLNDFRDEQIGHLQKLMQEATKPNKQFSITESTKSKF |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tupaia belangeri was not studied using RNA-Seq expression data.
Tupaia belangeri was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tbel_4126 retrocopy.
Tupaia belangeri was not studied using FANTOM5 data.
retro_tbel_4126 was not experimentally validated.
Retrocopy orthology:
Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 5 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000010811 | 1 retrocopy | |
| Tupaia belangeri | ENSTBEG00000006332 | 4 retrocopies |