RetrogeneDB ID: | retro_tbel_3175 | ||
Retrocopy location | Organism: | Treeshrew (Tupaia belangeri) | |
| Coordinates: | scaffold_132949:9993..11361(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | HK1 | ||
| Ensembl ID: | ENSTBEG00000016359 | ||
| Aliases: | None | ||
| Description: | hexokinase 1 [Source:HGNC Symbol;Acc:4922] |
Retrocopy-Parental alignment summary:
>retro_tbel_3175
AATAAGGAAGGCCTCCACAACGACAAAGAAATCCTGAACCACCTGGGAGTAGAGCCATCAGGTGACGACTGTATCTCAGT
CTAGCATGTGTACACCCTCGTCTCCTTTCACTCGGCCAACCTCATGGCTACCAGCTGGGTGCCATCTGGAACAGCCCACG
TGATAACAAGGGCATGCCCAGGCTGTGGACCACAGTTGGTGTCCACATGTCTCTTTACAAGATGCACCCACAGTATGTCC
AGCATTTTCACAGAACTCTGACCGCTTGGTGCCAGACTCGACCTCTGATTCCTCTTGGAGAGTGGCAGTAGCAAGGGGGC
CACCATGGTGACCGCAGTGACCTGCCGCCTGACTGAGCCGCACCAGTATATTGAGGAGACCCTGGCCCACTTCTTCCTCA
CCAAGGACGTGCTGCTGAGGAGAAGAGGGGCTGAGATGGAGCCGGGGCAGAGAGAGCAGACGCACAACAATGCTGTAAAG
ATGCTGCCCTTCTTCATCCAGAGCACCCTAGGTGGGACAGAGCATGGTGATTTTTGGCCCTGGATCCCAGAGGAACGAAT
TTCTGTGGTCTACTGGTGAAAATATATAGCAAAAAGAGAGAACGGTGGAAATGCACAACATGATCTACACTGTCCCCATT
GAGATCATGCAGGGCACCAGCAAAGAGCTGTCTGACCACATCGTCTACTGCATCTCTGACTTTCTGAACTACATGGGGAT
AAAAGGCCCCAGGATATCTCTGAGCTTCATGTTCTCATTTCTCTACAGGCAGATGAGTCTGGATGTGGGAATCTTGATCA
CCTGGACCAAGGATTTTAAGGCAACTGACCGTGTGGAGCACAATGCAGTCACCTTACTAGGGGGTGCCATAAAAAGGAGA
GAGGAATTTGACATGGATGTGGTGACTATGGTCAACGACATGGTGGGCACCATGATGGTCTGTGCTTATGGGAACCCATA
CGTGAGGTTGGACTCATTGTAGAAATGGGCAGCAATGCTTGCTACATGGAGGAAATGAAGAAAGTGGAGATACTGAAAGG
GACCGAGGGTCAAATGTGCATCAACATGCAGTGTGAACCTTTGGGGACAACGAGTGTCTGGATGACATCAGAACAACTTC
AACAGATTGGTGGATGGATATTCTCTAAATGCAGGAAGGCGAAGGCTTGAGAAGATGATCAGTGGTATGTACTTGGAGGT
AATTACCCGCAACATCTTGATCAACGTCACCAAGAAGGGATTCTTCTTTTGAGGGCAAATCTCAGAGCCGTTGAAGACCT
AGGGCATCTTTGAGACCAAGTGTCTCTCTTGGATGGAAAGGGAGCAATTAGTGCTTCTCCAGGTCCAGCCATCCTCCAGC
AGCTGGGT
ORF - retro_tbel_3175 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 69.98 % |
| Parental protein coverage: | 50.33 % |
| Number of stop codons detected: | 4 |
| Number of frameshifts detected: | 9 |
Retrocopy - Parental Gene Alignment:
| Parental | NKEGLHNAKEILTRLGVEPSDDDCISVQHVCTIVSFRSANLVATT-KGAILKRLADNY-MPWLLTTIVVD |
| NKEGLHN.KEIL..LGVEPS.DDCISV.HV.T.VSF.SANL.AT...GAI.....DN..MP.L.TT..V. | |
| Retrocopy | NKEGLHNDKEILNHLGVEPSGDDCISV*HVYTLVSFHSANLMATS<LGAIWNSPRDNKGMPRLWTTVGVH |
| Parental | GSLYKMHPQYARRFHKTLR-RLVPDS-DVRFLLSESGSGKGAAMVTAVAYRLAEQHRQIEETLAHFRLTK |
| .SLYKMHPQY...FH.TL..RLVPDS.D..FLL.ESGS.KGA.MVTAV..RL.E.H..IEETLAHF.LTK | |
| Retrocopy | MSLYKMHPQYVQHFHRTLT<RLVPDS<DL*FLL-ESGSSKGATMVTAVTCRLTEPHQYIEETLAHFFLTK |
| Parental | DMLLEVKRRMRTEMELGLRKQTHDDAVVKMLPSFVRSTPDGTEHGDF-LALDLGGTNFRVLLVKIRSGKK |
| D.LL...RR...EME.G.R.QTH..AV.KMLP.F..ST..GTEHGDF.LALD..GTNF..LLVKI.S.K. | |
| Retrocopy | DVLL---RRRGAEMEPGQREQTHNNAV-KMLPFFIQSTLGGTEHGDF<LALDPRGTNFCGLLVKIYSKKR |
| Parental | -RTVEMHNKIYAIPVEIMQGTGEELFDHIVSCISDFLDYMGIKGPRMPLGFTFSFPCKQTNLDVGILITW |
| .RTVEMHN.IY..P.EIMQGT..EL.DHIV.CISDFL.YMGIKGPR..L.F.FSF...Q..LDVGILITW | |
| Retrocopy | <RTVEMHNMIYTVPIEIMQGTSKELSDHIVYCISDFLNYMGIKGPRISLSFMFSFLYRQMSLDVGILITW |
| Parental | TKGFKATDCVGHDVVTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAYE-EPTCEVGLIVGTGSNACYME |
| TK.FKATD.V.H..VTLL..AIKRREEFD.DVV..VND.VGTMM.CAY..EP..EVGLIV..GSNACYME | |
| Retrocopy | TKDFKATDRVEHNAVTLLGGAIKRREEFDMDVVTMVNDMVGTMMVCAYG<EPIREVGLIVEMGSNACYME |
| Parental | EMKNVEMLEGTEGRMCINMEWG-AFGDNGCLDDIRT-EYDRLVDEYSLNAGKQRYEKMISGMYLGEIVRN |
| EMK.VE.L.GTEG.MCINM.....FGDN.CLDDIRT....RLVD.YSLNAG..R.EKMISGMYL..I.RN | |
| Retrocopy | EMKKVEILKGTEGQMCINMQCE<TFGDNECLDDIRT<NFNRLVDGYSLNAGRRRLEKMISGMYLEVITRN |
| Parental | ILIDFTKKGFLFRGQISEPLKTRGIFETKFLSQIESDRLALLQVR-AILQQLG |
| ILI..TKKGF.F.GQISEPLKT.GIFETK.LS..E...L.LLQV..AILQQLG | |
| Retrocopy | ILINVTKKGFFF*GQISEPLKT*GIFETKCLSWMEREQLVLLQVQ<AILQQLG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tupaia belangeri was not studied using RNA-Seq expression data.
Tupaia belangeri was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tbel_3175 retrocopy.
Tupaia belangeri was not studied using FANTOM5 data.
retro_tbel_3175 was not experimentally validated.
Retrocopy orthology:
Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Oryctolagus cuniculus | ENSOCUG00000006697 | 1 retrocopy | |
| Tupaia belangeri | ENSTBEG00000016359 | 1 retrocopy |
retro_tbel_3175 ,
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