RetrogeneDB ID: retro_tbel_2763

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: scaffold_118650:188470..188875(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: IDI2
• Ensembl ID: ENSTBEG00000009538
• Aliases: None
• Description: isopentenyl-diphosphate delta isomerase 2 [Source:HGNC Symbol;Acc:23487]

Sequence

>retro_tbel_2763
TTGTTGCATCAAACTTCTAGTGTCTTCTTATTCAACACTGACAATAAACTCCTGCTACAATAGAGATCAGATGCTAAAAT
TGCCTTTCCCTGTTGTTTTACCAATAATTGTAGTAGTCATCCATGAAGTAATCTTGGTGAGCTTGAAGAGAATGATGTCA
TTGGAGTAAAACAAGCAACACAGAGGTGTTTACAAACCGAGTCAGTAATTCCCATGGAAGAGGTTCCACCAGAAGAAATT
AATAATCTAACACGAATGTACTACAAAGTTTAGTCTGATGATATCTGGGGTGAACATGAAATTGATTACATCTTGTTTAT
GAGAAAGAACGTAACTTTGAATCCAGATTCTGGTGAGATTAAAAGCTACTGCTATGTGTCAAAGGAAGAACTGTAGGAAC
TTCTG

Alignment

ORF - retro_tbel_2763 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 51.11 %
• Parental protein coverage: 75.42 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LLHRGFSVALFNMKDQLFVQQRSDTKYTFPGHFSDSCSGHPLSIPEELEEKDALGIRRAALRRLQDELGI
          LLH...SV.LFN....L..Q.RSD.K..FP..F...CS.HP.S...ELEE.D..G...A..R.LQ.E..I
Retrocopy LLHQTSSVFLFNTDNKLLLQ*RSDAKIAFPCCFTNNCSSHP*SNLGELEENDVIGVKQATQRCLQTESVI

Parental  SQDQISTKDIICMSRMYHNNPSDDIWGEHEIGYLLLVRKNFTMNPDPREVKSYCYLNREELKELL
          .........I....RMY....SDDIWGEHEI.Y.L..RKN.T.NPD..E.KSYCY...EEL.ELL
Retrocopy PMEEVPPEEINNLTRMYYKV*SDDIWGEHEIDYILFMRKNVTLNPDSGEIKSYCYVSKEEL*ELL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_2763 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_2763 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000015260	1 retrocopy	retro_meug_1719,
Tupaia belangeri	ENSTBEG00000009538	1 retrocopy	retro_tbel_2763 ,