RetrogeneDB ID: | retro_tbel_1769 | ||
Retrocopy location | Organism: | Treeshrew (Tupaia belangeri) | |
| Coordinates: | GeneScaffold_569:11703..12207(+) | ||
| Located in intron of: | ENSTBEG00000017249 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | XRCC6BP1 | ||
| Ensembl ID: | ENSTBEG00000010031 | ||
| Aliases: | None | ||
| Description: | XRCC6 binding protein 1 [Source:HGNC Symbol;Acc:29452] |
Retrocopy-Parental alignment summary:
>retro_tbel_1769
GCTGTGAACAAAGACAGACACTTTTCCTGTGAAGACTGTAATGGAAATGTCAGCGGAGGTTTTGATGCTTCGACATCTCA
GATTGTCTTGTGTTAGAACAATATCCGTAACCAGGCCCATATGAACAGAGTGGTCACCCACGAGCTCATTCATGCCTTTG
ATCACCGTCGCGCTCATGTCGACTGGTTCACCAATGTCAGACACTTGGCCTGCTCAGAGGTTCGAGCTGCTAACCTTAGT
GGAGACTGCTCACTTATAAATGAAATATTCAGGTTACATTTTGGATTAAAACAACATCATCAGACTTGTGTGCGAGACAG
AGCCACCCTCTCTATCCTGGCTGTTAGGAACATCAGCAAGGAAGTAGCTCAGAAGGCAGTGGATGACGTTTTTGAATCTT
GTTTCAATGATCATGAACCTTTCGGAAGGATTCCACATAACAAGACTTATGCGAGATACGCTCATAAAGACTTTCAAAAT
CGTGATCGGTATTACTCAAATATA
ORF - retro_tbel_1769 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 98.81 % |
| Parental protein coverage: | 60.87 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | AVNKDRHFSCEDCNGNVSGGFDASTSQIVLCQNNIRNQAHMNRVVTHELIHAFDHCRAHVDWFTNVRHLA |
| AVNKDRHFSCEDCNGNVSGGFDASTSQIVLC.NNIRNQAHMNRVVTHELIHAFDH.RAHVDWFTNVRHLA | |
| Retrocopy | AVNKDRHFSCEDCNGNVSGGFDASTSQIVLC*NNIRNQAHMNRVVTHELIHAFDHRRAHVDWFTNVRHLA |
| Parental | CSEVRAANLSGDCSLINEIFRLHFGLKQHHQTCVRDRATLSILAVRNISKEVAQKAVDDVFESCFNDHEP |
| CSEVRAANLSGDCSLINEIFRLHFGLKQHHQTCVRDRATLSILAVRNISKEVAQKAVDDVFESCFNDHEP | |
| Retrocopy | CSEVRAANLSGDCSLINEIFRLHFGLKQHHQTCVRDRATLSILAVRNISKEVAQKAVDDVFESCFNDHEP |
| Parental | FGRIPHNKTYARYAHKDFQNRDRYYSNI |
| FGRIPHNKTYARYAHKDFQNRDRYYSNI | |
| Retrocopy | FGRIPHNKTYARYAHKDFQNRDRYYSNI |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Tupaia belangeri was not studied using RNA-Seq expression data.
Tupaia belangeri was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tbel_1769 retrocopy.
Tupaia belangeri was not studied using FANTOM5 data.
retro_tbel_1769 was not experimentally validated.
Retrocopy orthology:
Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Tupaia belangeri | ENSTBEG00000010031 | 1 retrocopy |
retro_tbel_1769 ,
|
| Tarsius syrichta | ENSTSYG00000006918 | 1 retrocopy |