RetrogeneDB ID: retro_taes_98

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 1B:32457171..32458230(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: TRAES3BF249900010CFD_g
• Aliases: None
• Description: None

Sequence

>retro_taes_98
CCTCTTCAAGGAAAACCAACACAAGCTCAAGACATAGAAAAGGACACGCTCCTTGGCAGGGGGCGTGCCAGCGATCGCGG
ATCGACCCCAGCTCCGGCTCCACCCACGGAAAGGCCGCGCACCCGCACCCCTGCATCGCGCCACCGCCAAGGAGCATCGA
GGGGTAGGCACATGTGCACCGACAAGCGGCTAGCGCTCGAGCCCATCAAGAGGAAGGAGGCCGCGGCTGCGCAACCTCGC
CATTCCAAGACTAGGGGCAAGGAGACGCCCTGGAGCAAGCATGGTGGGGCGGCCGTGGAAGAATCGTCAGACGGCACCTC
CCTACTCGTCCCGCCACGCAGGCTCGCCTAGGAGCTGGGCCATGAAGCTGCGCCGACTGGGGGGTCAGCGATGATGGCTG
ACCCGGTCGAAGAGTTCTTCCAGGGGGCAAAGAAGTGCCTCCCTCCCTTGCCCCGCCCAGACGCCATGGTCTCAAAGATC
GATGAGGTGATTGTCGCCAAGTTGGACAAGCTGGTCTGCTTCAACGACGAGGACGACGGAGGCACCGGCGAATCCCTTGA
CTTGGGACCGGCCCTGTCCCTGGCTCATCATACTCCACAGGCGGTGGACACGCATGCTCTGCAGCTGGGCGAGGTTACGC
AGAGGGTCACAGAGATGCAGCTCCAGGGAGAAGGAGAAGATGGTGCGCAGCTGCCCCTCTCCACCAAGCCAGGGCCAGCG
CTTGTCGGGAAGCCACCAGCAAGGAACAAGACCCCGCTCAAGACCAGGCCGACCGCCAAGCCGGTCAGACAGAGTGCCCG
ACAGGCTGCGAACCCCTCCCCGATGCTAGTCTCACAGCATGGAACGCTGAGGCTGGTGCAGGGGCCTGGCGTTCTGGGCC
CAAAGGAGAAGATGACGACACGGGCGGCAGAGGCCCTCATTCGATGTTTCGATGAACCCCTCTCAGACGACGACATTGCA
GCCATCGCAAAGCTCACTAGCCTTGATGCCCGTGTGCTCAAGGCGATCGCTGGCCTGCCAGGCATGCAAGGAGATGCCTC
TGAGCCTCGTTCCCCATGT

Alignment

ORF - retro_taes_98 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.55 %
• Parental protein coverage: 98.61 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PASGLPSPAASLGW-SMPEKGEIQGEPSGFRPADGGMAPPNECPRLKSIVGAPRGRHLCINKKAAIEPVK
          P..G.P..A...........G......S...PA.....P....P......GA.RGRH.C..K..A.EP.K
Retrocopy PLQGKPTQAQDIEKDTLLGRGRASDRGSTPAPAPPTERPRTRTPASRHRQGASRGRHMCTDKRLALEPIK

Parental  RKEATAGPFRQPKARGKSVARRKSGGSTVAESSGGPSLLTPPRRLTQEQGQGAGLAGGQDATEDPVEEFF
          RKEA.A...R..K.RGK.....K.GG..V.ESS.G.SLL.PPRRL..E.G..A...GG.....DPVEEFF
Retrocopy RKEAAAAQPRHSKTRGKETPWSKHGGAAVEESSDGTSLLVPPRRLA*ELGHEAAPTGGSAMMADPVEEFF

Parental  QGAKQTLPPPARHRPDAMAAKIDEEIAAKLDKPLRFEDGEDGGSDGSLDMGPTLSLARHTPLAANTQEVQ
          QGAK..LPP..R..PDAM..KIDE.I.AKLDK...F.D..DGG...SLD.GP.LSLA.HTP.A..T...Q
Retrocopy QGAKKCLPPLPR--PDAMVSKIDEVIVAKLDKLVCFNDEDDGGTGESLDLGPALSLAHHTPQAVDTHALQ

Parental  LGAVMQRVTEMQLQEEGAEGALQLPLFSKPAPAIVGKPPARDKTPLKARPQAKPARQSARQAANPSLVPV
          LG.V.QRVTEMQLQ.EG..GA.QLPL..KP.PA.VGKPPAR.KTPLK.RP.AKP.RQSARQAANPS...V
Retrocopy LGEVTQRVTEMQLQGEGEDGA-QLPLSTKPGPALVGKPPARNKTPLKTRPTAKPVRQSARQAANPSPMLV

Parental  SQRATLRLVQGLGVLRPKEKMTAQAAEALIRRLDEPLSDHDIAAIAKLTSLDANALKAIAGMPSQHGSAA
          SQ..TLRLVQG.GVL.PKEKMT..AAEALIR..DEPLSD.DIAAIAKLTSLDA..LKAIAG.P...G.A.
Retrocopy SQHGTLRLVQGPGVLGPKEKMTTRAAEALIRCFDEPLSDDDIAAIAKLTSLDARVLKAIAGLPGMQGDAS

Parental  PPHSPC
          .P.SPC
Retrocopy EPRSPC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_98 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	TRAES3BF249900010CFD_g	1 retrocopy	retro_taes_98 ,