RetrogeneDB ID: retro_taes_80

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: IWGSC_CSS_4DS_scaff_1116037:19..577(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: Traes_4DS_8C6D619AD
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_7BL_F7E745685
• Aliases: None
• Description: None

Sequence

>retro_taes_80
GTTGAAGTGGACAAGCCTTTGGGTCTGACTCTTGGACAGAAGCAAGGTGGTGGAGTTGTCATCACTGGTGTGGAAGGAGG
TGGCAACGCAGCAAAAGCTGGGCTTAAATCTGGAGATCAAGTTCTGTACACAAGCAGCTTCTTTGGTGATGAGCTTTGGC
CTGCTGATAAGTTGGGGTTCACTAAAACAGCTATTCAGGCAAAACCTGATTCTGTCTACTTTGTCATCAGCAGAGGTGGT
GCGGATGTTGATGTGAAGAAGCTAAATAAGCGTCCGGCTCCTCCTCGGTTTGGAAGAAAGTTAACCGAGACTCAGAAGGC
AAGAGCTACTCACATTTGTCTTGATTGTGGATTCATATACACTTTACCAAAGCCTTTTGATGAACAGCCGGACACATACG
TATGTCCTCAATGTATAGCGCCAAAGAAACGGTTTGCGAGGTATGATGTGAACACAGGGAAGGCCATAGGAGGAGGACTG
CCTCCGATCGGTGTTATTGTTGGCTTATTGGCCGGTCTTGGAGCTGTTGGAGCTCTGCTTGTGTATGGTCTTCAGTGA

Alignment

ORF - retro_taes_80 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.26 %
• Parental protein coverage: 98.54 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LSAGHNSSPSVLPAGVESGGNAARAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVVSR
          L..G......V...GVE.GGNAA.AGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFV.SR
Retrocopy LTLGQKQGGGVVITGVEGGGNAAKAGLKSGDQVLYTSSFFGDELWPADKLGFTKTAIQAKPDSVYFVISR

Parental  GGGDIDVKRLPKRPAPPRFGRKLSDSQKARATHICLDCGYIYFLPKAFEEQPDEYGCPQCNAPKK
          GG.D.DVK.L.KRPAPPRFGRKL...QKARATHICLDCG.IY.LPK.F.EQPD.Y.CPQC.APKK
Retrocopy GGADVDVKKLNKRPAPPRFGRKLTETQKARATHICLDCGFIYTLPKPFDEQPDTYVCPQCIAPKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_80 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_7BL_F7E745685	1 retrocopy	retro_taes_80 ,