RetrogeneDB ID: retro_taes_69

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: IWGSC_CSS_4DS_scaff_2264729:2..641(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: Traes_4DS_7A697A21D
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_6AS_606F61E8B
• Aliases: None
• Description: None

Sequence

>retro_taes_69
CCGTTTAGCCGTTTCTCCGAAATCGTAAGCGGCGGAGGAAAGACGGTGTGGGGAAACCCGGCTGATGTTGCGACTGTGGT
CGGAGGTGAAACATTCGACGTTGTTCTTGACAACAATGGCAAGGACTTGGATACTGTCAGGCCAGTGGTGGATTGGGCTA
AAAGCTCTGGCGTTAAGCAGTTCTTGTTCATAAGCAGCGCGGGGATCTACAAGTCCACCGAAGAACCTCCTCACGTTGAA
GGGGACGCAGTGAAAGCCGACGCAGGTCACGTGGGAGTGGAGAAGTATTTAGCTGAAACCTTCGGGAACTGGGCCTCCTT
TCGACCACAGTACATGATCGGCTCTGGCAACAACAAAGACTGCGAAGAATGGTTCTTCGACAGGATTGTGAGGGATAGAC
CAGTGCCGATCCCAGGATCAGGACTGCAGCTAACCAACATATCTCATGTCAGAGACTTGTCTTCCATGCTCACTTCAGCT
GTGTCCAACCCTGAGGCTGCCTGCTGCAACATCTTCAACTGCGTTAGTGACAGAGCCGTCACTCTTGACGGTATGGCCAA
GCTCTGTGCCGCTGCTGCTGGCAAAACTGTTGAGATCGTGCATTACGACCCTAAAGCCGTTGGGGTTGACGCCAAGAAG

Alignment

ORF - retro_taes_69 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.81 %
• Parental protein coverage: 53.65 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PFSRFSELTSAGAKTVWGDPADVGAAVGGATFDVVLENNGKDLDAVKPVADWAKSAGVGQFLFISSAGIY
          PFSRFSE..S.G.KTVWG.PADV...VGG.TFDVVL.NNGKDLD.V.PV.DWAKS.GV.QFLFISSAGIY
Retrocopy PFSRFSEIVSGGGKTVWGNPADVATVVGGETFDVVLDNNGKDLDTVRPVVDWAKSSGVKQFLFISSAGIY

Parental  LQTDEPPHVEGDAVKESAGHVGVEKYIAAEFGSWASFRPQYMTGSGNNKDCEEWFFDRIVRKRPVPIPGS
          ..T.EPPHVEGDAVK..AGHVGVEKY.A..FG.WASFRPQYM.GSGNNKDCEEWFFDRIVR.RPVPIPGS
Retrocopy KSTEEPPHVEGDAVKADAGHVGVEKYLAETFGNWASFRPQYMIGSGNNKDCEEWFFDRIVRDRPVPIPGS

Parental  GMQLTNISHARDLGSMLTLAVDNPDAAAGKIFNCVSDRGVTLNGLAKMCAAAAGATVEIVNYDPAAAGVD
          G.QLTNISH.RDL.SMLT.AV.NP.AA...IFNCVSDR.VTL.G.AK.CAAAAG.TVEIV.YDP.A.GVD
Retrocopy GLQLTNISHVRDLSSMLTSAVSNPEAACCNIFNCVSDRAVTLDGMAKLCAAAAGKTVEIVHYDPKAVGVD

Parental  AKK
          AKK
Retrocopy AKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_69 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_6AS_606F61E8B	1 retrocopy	retro_taes_69 ,