RetrogeneDB ID: retro_taes_62

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 3B:150548384..150550820(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: TRAES3BF271100030CFD_g
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_7BL_BAF53625C
• Aliases: None
• Description: None

Sequence

>retro_taes_62
ATGGGCGCACGCTCCACCTCCCTGCTTCTACTGACTTCGATGATCCATCTGCTCTCGCGCGCCTCGGCCCGCGAGTTCCT
CTCGCCAGGCTCCTCGCTCTCCACCGAGGACGGCTCCGGCATGCTCCATTCGCCAAACGGCGCCTTCACCTGCGGCTTCC
ACAACATCTCCCCAAACGCCTCCGTCTTCTCCGTCTGGTTCGCCGGCACGGCCGAGAAGACCGTCGTCTGGAGCGCAAAC
CATCTCCGCCCCGTCTACTCCCGGGGATCCCGGGCCGTGTTGCACGCTGACGGCAGCATGGTTGTGGAAGACTACGACGG
CGAGCCCGCGTGGGCAAACAACGTCAGCTCCTCATCAAAGGCCGAGCAAGCCCGGCTGCTGGACACGGGCAACCTCGTCG
TCAGCGGCCAAGGTGATGTCATTCTGTGGCAAAGCTTTGATTCTCCTACTGATACGCTGCTGCCCAATCAGAGCATCACT
GCGGCTACGAAGTTGGTGTCCGCTCATAGGTTACTTGCTCCTGGGCGCTACAGTTTCCATTTCGACGACGCGCATTTGCT
CTCGCTGTTTGATGATGAGCAGGACATCTCTTTTATCTACTGGCCAAAGCCTGATCTTGCTGCCTGGGCAAGGCAAAGAA
ACCCATTTAGTACCACCACCGTTGGGGTCCTTGATAGCTGGGGGTATTTCCTTGGGAGTGATGATTTGACTTTCAAGTCT
GCTGACTGGGGTCCTGGGGTTATGAGGAGGCTAACATTGGATTATGATGGCAACCTCAGATTATACAGTCTAGAAAACCG
GAAATGGTCGGTCACATGGATAGCATTTCAGACCTGCTTCGTACACGGTCAGTGTGGTATGAATGGAATATGTGTGTATA
CACCTAGGCCTGCTTGCGCATGCGCCCCTGGACACGAGGTCATCGACCCAAGTGACCGGAGCAAAGGCTGCCGGCCGAGG
TTCAACCTCAGTTGTGATGGGCAGGAGATGAAATTTGTGAAGCTACCCTCCACTGACTTCATAGCTTATGATCAAAGTAA
GCGCAGCTTAGTTTCCTTTGATACTTGCAAGCAGATATGCATGGATGACTGCAGTTGCAAAGGTTTCTCATACTGGCAAG
GAGGTGGATCCTGCTACCCAAAGTCATCCCTTGTTGGCGGGGTAACCAGCCCAGGCTTACCTGGTTCTATCTATCTCAAG
CTTCCAAAGACAGTACAGGTCTCAGGGTCCTCAATTCCTCAATCGCAGCCTTTTGGTCCCACATATGCTCCGAACTGTAG
TGCAAAGAACAAATATTTCACTGCAGATTTTCCGGATATACCCAAGAGCAATCAGAGTGGATCAAAGTATTTGTACTTCT
ATGGGTTCTTATCAGCAATATTCTGTGTGGAGGTAATATTTGTGGCATTAGGATGCTGGTTTATGGTGAGATTGGAGGGC
AAGCAGTTAACAGGAGTATGGCCAGCTGAGGTTGGCTATGAGATGATAACCAACCACTTCCGGAGATATACTTACAAGGA
GTTGCAGAGAGCAACTCGGAAGTTCAAGTGTCAGATTGGGAGGGGCGCATCTGGTCTTGTGTACAAGGGGATCTTGAAAG
ACAAGAGGGCAGTAGCAGTGAAAAGGTTGGCAGACATAAACCAAGGCGAAGAAGAGTTCCAACATGAACTGAGTGTGATT
GGAAAGATCTACCATATGAATCTGGTGAGGGTTTGGGGATTCTGTTCTGATGGTCCACACAGGATATTGGTTTTAGAGTA
CGTTGAAAATGGTTCTTTGGACAAAACGCTGTTTAGTGGAAAGGCCTCACAGATATTACTTGGATGGAATGAAAGATTTA
AGATTGCTCTAGGGGTGGCAAAAGGATTGGCTTATCTTCATCATGAGTGCCTGGAATGGGTTATCCACTGCGACCTCAAG
CCTGAGAACATACTGTTGGATGGGAACTTGGAGCCAAAGATCACCGACTTTGGCCTCGCAAAACTTCTGAATAGGGGTGG
ATCCAACAAAAGTGTATCGCGGATCCATGGAACTAGAGGTTATATAGCTCCTGAGTGGGTTTCTAGCCTCCCAATAACAG
CAAAGGTTGATGTCTACAGCTTTGGAGTGGTTCTCCTAGAACTACTGAAGGGGGCTCGTGTTTCAGACTGGGCGCCAAAT
GCTGATGAAGAAGTGGAAATGGTCCTTCGAAGGGTCGTTAGGATGCTTGCAGAAAATCTGATGCTGGAGGGTAGCAAACA
GTTATGGATCGATGACTTCATTGACTCCAGGTTAAACCGCCAGTTCAATGACCTGCAAGCAAGAACAATGATCAAGCTGG
CTGTTTCATGCGTAGAGGAAGACAGTAGAAAAAGACCCACAATGGAAAATGCTGTGCAGATGCTCCTTTCAGTTGATGAA
GCCAGTGGCATAATGCAGCAGTATTCTACCAACTGA

Alignment

ORF - retro_taes_62 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.81 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MDARSTSLLLLT-LIHLLLRISAREFLLPGSSLSIEDSSGALHSPNGAFTCGFDNISPNASVFSIWFSDT
          M.ARSTSLLLLT..IHLL.R.SAREFL.PGSSLS.ED.SG.LHSPNGAFTCGF.NISPNASVFS.WF..T
Retrocopy MGARSTSLLLLTSMIHLLSRASAREFLSPGSSLSTEDGSGMLHSPNGAFTCGFHNISPNASVFSVWFAGT

Parental  AEKTVVWSANHLHPVYSWGSRVMLHADGRMVVEDYSGQPAWANNVSSSSKAEQAQLLDTGNLVVRGQGDI
          AEKTVVWSANHL.PVYS.GSR..LHADG.MVVEDY.G.PAWANNVSSSSKAEQA.LLDTGNLVV.GQGD.
Retrocopy AEKTVVWSANHLRPVYSRGSRAVLHADGSMVVEDYDGEPAWANNVSSSSKAEQARLLDTGNLVVSGQGDV

Parental  ILWQSFDSPTDTLLPNQNITAATKLVSTHRLLVPGHYSFHFDDAHLLSLFDDQKDISFIYWPKPDLTTWA
          ILWQSFDSPTDTLLPNQ.ITAATKLVS.HRLL.PG.YSFHFDDAHLLSLFDD..DISFIYWPKPDL..WA
Retrocopy ILWQSFDSPTDTLLPNQSITAATKLVSAHRLLAPGRYSFHFDDAHLLSLFDDEQDISFIYWPKPDLAAWA

Parental  RQRNPFSTTTIGLLDSWGYFHGSDNLTFKSTDWGLGIMRRLTLDYDGNLRLYSLENREWSVTWIAFQTCF
          RQRNPFSTTT.G.LDSWGYF.GSD.LTFKS.DWG.G.MRRLTLDYDGNLRLYSLENR.WSVTWIAFQTCF
Retrocopy RQRNPFSTTTVGVLDSWGYFLGSDDLTFKSADWGPGVMRRLTLDYDGNLRLYSLENRKWSVTWIAFQTCF

Parental  VHGLCGMNGICVYTPRPAYACAPGHEIIDPSDRSKGCRPKFNLSCHGQEMKFVKLPSTDFIAYDQSKLSL
          VHG.CGMNGICVYTPRPA.ACAPGHE.IDPSDRSKGCRP.FNLSC.GQEMKFVKLPSTDFIAYDQSK.SL
Retrocopy VHGQCGMNGICVYTPRPACACAPGHEVIDPSDRSKGCRPRFNLSCDGQEMKFVKLPSTDFIAYDQSKRSL

Parental  VSFDTCKKICMNDCSCKGFSYWQGGGSCYPKSSLVGGVTSPGLPGSIYLKLPKTLQVSGSSIPQSQPFGL
          VSFDTCK.ICM.DCSCKGFSYWQGGGSCYPKSSLVGGVTSPGLPGSIYLKLPKT.QVSGSSIPQSQPFG.
Retrocopy VSFDTCKQICMDDCSCKGFSYWQGGGSCYPKSSLVGGVTSPGLPGSIYLKLPKTVQVSGSSIPQSQPFGP

Parental  RYAPNCSANNKYFTADFLDIPKSSRSGSKYLYFYGFLSAIFCVEVMFVALGCWFMLRLEGKQLTGVWPAE
          .YAPNCSA.NKYFTADF.DIPKS..SGSKYLYFYGFLSAIFCVEV.FVALGCWFM.RLEGKQLTGVWPAE
Retrocopy TYAPNCSAKNKYFTADFPDIPKSNQSGSKYLYFYGFLSAIFCVEVIFVALGCWFMVRLEGKQLTGVWPAE

Parental  VGYEMITNHFRRYTYKELQRATRKFKYQIGRGASGLVYRGVLKDKRAVAVKRLADINQGEEEFQHELSVI
          VGYEMITNHFRRYTYKELQRATRKFK.QIGRGASGLVY.G.LKDKRAVAVKRLADINQGEEEFQHELSVI
Retrocopy VGYEMITNHFRRYTYKELQRATRKFKCQIGRGASGLVYKGILKDKRAVAVKRLADINQGEEEFQHELSVI

Parental  GKIYHMNLVRVWGFCSDGPHRILVLEYVENGSLDKTLFSGKGSQILLEWNERFKIALGVAKGLAYLHHEC
          GKIYHMNLVRVWGFCSDGPHRILVLEYVENGSLDKTLFSGK.SQILL.WNERFKIALGVAKGLAYLHHEC
Retrocopy GKIYHMNLVRVWGFCSDGPHRILVLEYVENGSLDKTLFSGKASQILLGWNERFKIALGVAKGLAYLHHEC

Parental  LEWVIHCDLKPENILLDENLEPKITDFGLAKLLNRGGSNKKVSRIHGTRGYIAPEWVSSLPITAKVDVYS
          LEWVIHCDLKPENILLD.NLEPKITDFGLAKLLNRGGSNK.VSRIHGTRGYIAPEWVSSLPITAKVDVYS
Retrocopy LEWVIHCDLKPENILLDGNLEPKITDFGLAKLLNRGGSNKSVSRIHGTRGYIAPEWVSSLPITAKVDVYS

Parental  FGVVLLELLKGARVSDWASNADEEVEMVLRRVVRMLAENLMLEGSKQLWIADFIDSRLNRQFNNLQARTM
          FGVVLLELLKGARVSDWA.NADEEVEMVLRRVVRMLAENLMLEGSKQLWI.DFIDSRLNRQFN.LQARTM
Retrocopy FGVVLLELLKGARVSDWAPNADEEVEMVLRRVVRMLAENLMLEGSKQLWIDDFIDSRLNRQFNDLQARTM

Parental  IKLAVSCVEEDSRKRPTMENAVQMLLSVDEASGIMQ
          IKLAVSCVEEDSRKRPTMENAVQMLLSVDEASGIMQ
Retrocopy IKLAVSCVEEDSRKRPTMENAVQMLLSVDEASGIMQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_62 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_7BL_BAF53625C	1 retrocopy	retro_taes_62 ,