RetrogeneDB ID: retro_taes_6

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: IWGSC_CSS_4DS_scaff_967091:32..425(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: Traes_4DS_13256B7A2
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_1BL_7F667EEA3
• Aliases: None
• Description: None

Sequence

>retro_taes_6
ATGTTTGACGTCACAGCACGTCTCACATACAAGAACGTTCCAACATGGCACCGTGATCTCTGCAGGGTGTGCGAGAATAT
TCCCATTGTTCTCTGTGGGAACAAAGTCGATGTCAAGAACAGGCAAGTCAAGGCCAAGCAGGTGACATTCCACAGGAAGA
AGAATCTGCAGTACTACGAGATATCCGCAAAGAGCAACTACAACTTCGAGAAGCCCTTCTTGTACCTCGCTAGGAAACTT
GCTGGCGACCCTAACCTTCACTTTGTCGAGTCACCAGCTCTTGCTCCCCCTGAGGTTCACATTGACGTTGCTGAGCAGCA
GAAGAACGAGGCTGATCTCATTGCCGCCGCTGCTCAGCCTCTCCCAGATGATGATGATGACGCTTTTGAGTAA

Alignment

ORF - retro_taes_6 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.46 %
• Parental protein coverage: 56.77 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MFDVTSRLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE
          MFDVT.RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE
Retrocopy MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE

Parental  KPFLYLARKLAGDPNIHFVEAVALKPPEVTFDLAMQQQHEAELAAAAAQPLPDDDDDLIE
          KPFLYLARKLAGDPN.HFVE..AL.PPEV..D.A.QQ..EA.L.AAAAQPLPDDDDD..E
Retrocopy KPFLYLARKLAGDPNLHFVESPALAPPEVHIDVAEQQKNEADLIAAAAQPLPDDDDDAFE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_6 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Solanum tuberosum	PGSC0003DMG400029753	1 retrocopy	retro_stub_44,
Triticum aestivum	Traes_1BL_7F667EEA3	1 retrocopy	retro_taes_6 ,