RetrogeneDB ID: retro_taes_59

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: IWGSC_CSS_4DS_scaff_1351512:2..251(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: Traes_4DS_57978F5E5
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_2BL_8706FBCEF
• Aliases: None
• Description: None

Sequence

>retro_taes_59
ATGGGTTTAACTGACCAGGACATTGTCGCTCTGTCTGGTGCCCACACTCTGGGAAGATGCCACAAGGATAGATCTGGCTT
CGAAGGTGCCTGGACTTCAAACCCTCTTATCTTCGACAACTCTTACTTCAAGGAACTCTTGAGCGGGGAGAAGGAAGGTC
TTTTTCAGCTCCCTTCTGATAAGGCTCTGTTGGACGATCCCGTCTTCCGTCCTCTTGTTGAGAAATACGCTGCTGACGAG
GAAGCATTT

Alignment

ORF - retro_taes_59 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.54 %
• Parental protein coverage: 77.57 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGLSDQDIVALSGGHTLGRCHKERSGFEGAWTANPLIFDNSYFTELLSGEKEGLLQLPTDKTLLTDPAFR
          MGL.DQDIVALSG.HTLGRCHK.RSGFEGAWT.NPLIFDNSYF.ELLSGEKEGL.QLP.DK.LL.DP.FR
Retrocopy MGLTDQDIVALSGAHTLGRCHKDRSGFEGAWTSNPLIFDNSYFKELLSGEKEGLFQLPSDKALLDDPVFR

Parental  PLVDKYAADEDAF
          PLV.KYAADE.AF
Retrocopy PLVEKYAADEEAF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_59 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_2BL_8706FBCEF	1 retrocopy	retro_taes_59 ,