RetrogeneDB ID: | retro_taes_57 | ||
Retrocopy location | Organism: | Wheat (Triticum aestivum) | |
| Coordinates: | IWGSC_CSS_5BS_scaff_670836:2..389(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | Traes_5BS_340AF87E9 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | Traes_2AS_1475F8BDB | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_taes_57
AGTGGTTCTGGTGGTACCATTGCTAAGGACGCTCTTGGAAATGATGTTATTGCTTCTGAATGGCTCAAGAACCATGGACC
AGGAGACCGCACCCTTACCCAGGGACTGAAGGGAGATCCAACTTACTTGGTTGTCGAGAGCGACAGAACTCTTGCAACTT
TTGGAATAAATGCTGTCTGCACACATCTTGGGTGTGTGGTGCCATTTAATAGTGCTGAGAACAAATTCATCTGTCCATGC
CATGGATCTCAGTACAATAACCAAGGCAGAGTTGTGAGAGGACCTGCACCTTTGTCATTGGCCTTGGCGCACTGTGATGT
TGATGACGGAAAGGTGGTGTTGGTTCCATGGACTGAAACAGATTTCAGAACTGGTGATGCACCGTGG
ORF - retro_taes_57 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 83.47 % |
| Parental protein coverage: | 54.5 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | KDKLGNDILVEDWLKTHGPNDRTLAQGLKGDPTYLVVESDKTLATYGINAVCTHLGCVVPWNAAENKFLC |
| KD.LGND.....WLK.HGP.DRTL.QGLKGDPTYLVVESD.TLAT.GINAVCTHLGCVVP.N.AENKF.C | |
| Retrocopy | KDALGNDVIASEWLKNHGPGDRTLTQGLKGDPTYLVVESDRTLATFGINAVCTHLGCVVPFNSAENKFIC |
| Parental | PCHGSQYNNQGKVVRGPAPLSLALVHADVDDGKVVFVPWVETDFRTGDNPW |
| PCHGSQYNNQG.VVRGPAPLSLAL.H.DVDDGKVV.VPW.ETDFRTGD.PW | |
| Retrocopy | PCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVLVPWTETDFRTGDAPW |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Triticum aestivum was not studied using RNA-Seq expression data.
Triticum aestivum was not studied using ChIP-Seq data.
Triticum aestivum was not studied using EST data.
Triticum aestivum was not studied using FANTOM5 data.
retro_taes_57 was not experimentally validated.
Retrocopy orthology:
Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Triticum aestivum | Traes_2AS_1475F8BDB | 1 retrocopy |
retro_taes_57 ,
|