RetrogeneDB ID: retro_taes_54

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 5B:198569099..198570980(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: Traes_5BL_08FFB5ABF
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_5BL_2BCCF6926
• Aliases: None
• Description: None

Sequence

>retro_taes_54
GCCAACTCGGGCAACCCCTGCCTCGACCTCTTCTTCCAGGTGGTGCCCGACACGCCGCCCGAGCGCGTGCGCCAGCTGCT
CGCCGCCGCGTGGGCGCACGACGCGCTCACGGCGCTCAAGCTCGCCTGCAACCTCCGCGGCGTCCGCGGCACCGGCAAGT
CGGACAAGGAGGGCTTCTACGCGGCCGCGCTCTGGCTGCACGACAACCACCCGCGCACGCTCGCCTGCAACGTCGCCGCG
CTCGCCGAGTTCGGGTACCTCAAGGACTTCCCCGAGCTGCTCTTCCGCCTCATCCACGGCCCCGACGTGCGCAAGGTCGC
CAGGGAGGGCGCCGCGGCCGAGAAGGTGAGGAGGAAGGAGAAGAACTTCGCCAAGCAGCGGGAGGCCTTGCGGGCTAGCC
TGGCCGGCCGCAAGCGCGCCCGCGAGCTGGCCCCTGTGCCTCCCAAGGCCACCTTCGGCGACTTCCTCTCCGCCGCCCTC
TCCAAGTCCGGCAGGAAGCCCATGGAGGTGGAGACCGTCCCTGTGTCTGTCGCGGTCCAGGAGCCGGCCGAGCAGAAGCC
CGAGGAGATGGAGGTGGACCAGAAGAAGAAGAAGCCCCGGCGGATGTCCAAGAAGGTCCGGAAGGTGGCCAAGCTCGCCG
TGCAGTCGCTGGAGACGTACTACGGCGACCGCGCGTACCGCTTCCTGTTCGAGGCCGTCGCGGACTTCTTCGCCGCCCTC
CTCGCCTCGGACCTCGAGCAGCTGGCCACCGGCGGCAAGAAGAGGAAGATCGGGCTCGCCGCCAAGTGGTGCCCCACGCC
CGGCTCGTCCTTCGACCGCACCACGCTGCTCTGCGAGGCCATCGCCCACCGCCTCTTCCCGCGCGACTCCGACCCAGAGT
ACGCCCAGCTCACGGACGAGCACTACACGTACCGCGCCCTCCACCGCCTCCGCCGCGAGGTGCTCGTGCCACTGCGCAAG
GTGCTGGAGCTCCCGGAGGTGTACATGAGCGCACAGCGGTGGTCGGAGCTTCCCTACACCCGCGTGGCCTCGGTGGCCAT
GCGGCGCTACAAGTTCCTCTTCAAGAAGCACGATGAGGAGCGCTTCGACAAGTACCTGGAGGACGTGGAGGCCGGCAAGG
CCAAGATCTCGGCGGGCGCGCTCCTGCCGCACGAGATCGCCGCCTCCGCCTTAAGTGGCGTGGAGGACGACGTGTCGGAG
CTGCAGTGGCGCCGCATGGTAGACGACCTGCGCTCCAAGGGGGCGCTGCGCAACTGCATCTCCGTCTGCGATGTCTCCGG
CAGCATGGACGGCACCCCTATGCATGTGTGCATCGCGCTGGGCGTGCTCACGTCGGAGCTCAGCGAGGAGCCCTGGGCAG
GCAAGGTGATCACCTTCAGCCAGAGGCCCGAGATCCACCTGATCAAGGGCAAGACCCTTCGGGAGAAGATGAGTTTCGTG
GAGACTATGCAGTGGGACATGAACACCAACTTCCAGGCGGTGTTCGACCAGATCCTCCGCACTGCGGTGGAGGCCCGGCT
GGCGCCGGAGAAGATGATCAGGACCATTTTCGTGTACAGTGACATGGAGTTCGACGAGGCGTCGGCGACCGGCGGGTACT
ATGCTCGCAGCAGTTCGTGGGACACGGACTACGAGGTGATCTGCAAGAAGTTCAGGGCTGCCGGGTACGGCGACGCGGTG
CCCCAGATCATCTTCTGGAACCTGCGTGACTCGAAGTCGACGCCAGTGACCTCGACCCAGCCTGGGGTGGCCATGGTGAG
CGGCTTCTCCAAGAACCTCCTCAAGATCTTCCTGAAGAACGACGGCGTGGTGAACCCCGAGGCCGTCATGATGGAGGCCA
TCGCCGGCGAGGAGTACCAGAAGCTGGAGGTGTTCGATTAG

Alignment

ORF - retro_taes_54 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.19 %
• Parental protein coverage: 90.06 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ANSGNPCLDFFFQVVPDTPAERVRGLLAAAWAHDALTALKLACNLRGVRGTGKSDKEGFYAAALWMHEHN
          ANSGNPCLD.FFQVVPDTP.ERVR.LLAAAWAHDALTALKLACNLRGVRGTGKSDKEGFYAAALW.H...
Retrocopy ANSGNPCLDLFFQVVPDTPPERVRQLLAAAWAHDALTALKLACNLRGVRGTGKSDKEGFYAAALWLHDNH

Parental  PRTLACNIAALAEFGYLKDFPELLFRLIHGPDVRKVAKAAAEAEKARKKEKALGHRRAALRTRLASRRRR
          PRTLACN.AALAEFGYLKDFPELLFRLIHGPDVRKVA...A.AEK.R.KEK.....R.ALR..LA.R.R.
Retrocopy PRTLACNVAALAEFGYLKDFPELLFRLIHGPDVRKVAREGAAAEKVRRKEKNFAKQREALRASLAGRKRA

Parental  RRLPPLPPKPTFGDFLAAALWKSMQSKALVVEAVPVSVAV--PEAQKPEVMEVDQKKTSPRKPEMSKKVR
          R.L.P.PPK.TFGDFL.AAL.KS...K...VE.VPVSVAV..P..QKPE.MEVDQKK..PR...MSKKVR
Retrocopy RELAPVPPKATFGDFLSAALSKSGR-KPMEVETVPVSVAVQEPAEQKPEEMEVDQKKKKPRR--MSKKVR

Parental  KVAKLAVQSLKTYYGDRAYRFLFDAVADFFAALLTSDLEQLSHGGKTMKIGLAAKWCPTPGSSFDRTTLL
          KVAKLAVQSL.TYYGDRAYRFLF.AVADFFAALL.SDLEQL..GGK..KIGLAAKWCPTPGSSFDRTTLL
Retrocopy KVAKLAVQSLETYYGDRAYRFLFEAVADFFAALLASDLEQLATGGKKRKIGLAAKWCPTPGSSFDRTTLL

Parental  CEAIARRLFPRDSDPEYAQLSDEHYTYCALHRLRRQVLVPLRKVLKLPEVYMSAQRWSELPYTRVASVAM
          CEAIA.RLFPRDSDPEYAQL.DEHYTY.ALHRLRR.VLVPLRKVL.LPEVYMSAQRWSELPYTRVASVAM
Retrocopy CEAIAHRLFPRDSDPEYAQLTDEHYTYRALHRLRREVLVPLRKVLELPEVYMSAQRWSELPYTRVASVAM

Parental  RRYKFLFKKHDEVRFGRYLDDVKAGKAKISAGALLPHEIAAAALRGQEDDVSELQWRRMVEDLRSKGLLR
          RRYKFLFKKHDE.RF..YL.DV.AGKAKISAGALLPHEIAA.AL.G.EDDVSELQWRRMV.DLRSKG.LR
Retrocopy RRYKFLFKKHDEERFDKYLEDVEAGKAKISAGALLPHEIAASALSGVEDDVSELQWRRMVDDLRSKGALR

Parental  NCISVCDVSASMDGKPMEVCIALGVLTSELSERPWKGKVITFHSRASIHLIKGNTLREKMKFVERLEWGG
          NCISVCDVS.SMDG.PM.VCIALGVLTSELSE.PW.GKVITF..R..IHLIKG.TLREKM.FVE...W..
Retrocopy NCISVCDVSGSMDGTPMHVCIALGVLTSELSEEPWAGKVITFSQRPEIHLIKGKTLREKMSFVETMQWDM

Parental  STNFQRVFDQILRTAVDAGLAPQKMIRTVFVYSDMEFNMAS--GAYYGGKPSWDSDYEVICKKFRAAGYG
          .TNFQ.VFDQILRTAV.A.LAP.KMIRT.FVYSDMEF..AS..G.YY....SWD.DYEVICKKFRAAGYG
Retrocopy NTNFQAVFDQILRTAVEARLAPEKMIRTIFVYSDMEFDEASATGGYYARSSSWDTDYEVICKKFRAAGYG

Parental  DVVPQIVFWNLRDSRSMPVTSTQPGVAMVSGFSKNILKIFLQNDGVVNPEAIMMQAIAGDEYQKLAVFD
          D.VPQI.FWNLRDS.S.PVTSTQPGVAMVSGFSKN.LKIFL.NDGVVNPEA.MM.AIAG.EYQKL.VFD
Retrocopy DAVPQIIFWNLRDSKSTPVTSTQPGVAMVSGFSKNLLKIFLKNDGVVNPEAVMMEAIAGEEYQKLEVFD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_54 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_5BL_2BCCF6926	1 retrocopy	retro_taes_54 ,