RetrogeneDB ID: retro_taes_52

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: IWGSC_CSS_4DS_scaff_926327:13..598(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: Traes_4DS_D50FB82F2
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_2DS_46C9F8F5F
• Aliases: None
• Description: None

Sequence

>retro_taes_52
GTTGGGTCTAAGAGAACCGGGCTTGTGATCAGGGCTCAGCAGAACGAGTCGGTGCCGGAAAGTAGTCGCCGGTCAGTGAT
TGGGCTCGTTGCTGCTGGTTTAGTCGGTGGTTCGTTCGTTAAGTCTGCCGTCGCCGCTGAAGCTCTTGCTATTAAAGTTG
GTCCTCCTCCACCTCCTTCCGGTGGTCTACCTGGAACAGATAACTCAGACCAAGCCAGAGACTTTTCACTGAAGTTGAAA
GACAGGTTTTACATACAGCCATTGTCACCAACAGAAGCTGCAGCTAGGGCCAAAGAATCTGCTAAAGAGATCATCAACGT
TAAGACTTTGATCGACAAAAAAGCTTGGCCTTACGTTCAGAACGATCTCCGTTTAAGAGCATCGTACCTCCGTTACGATC
TTAACACCGTTATCTCCGCTAAGCCTAAGGAAGAGAAACAAAGCCTCAAAGAACTCACCGGCAAGCTCTTCCAAACCATT
GACAACCTGGACTATGCGGCGAGGTCAAAGAGCAGCCCGGATGCTGAGAAGTATTACTCAGAGACTGTCTCGAGTTTGAA
CAATGTTCTTGCCAAGATTGGTTAA

Alignment

ORF - retro_taes_52 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.89 %
• Parental protein coverage: 90.19 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GRRASRFIVRASSAEA-EAAGRRAVLGLMASGVVGSAFAQVVHAGTVAAIKVGPPPPLSGGLPGTDNSDE
          G........RA...E......RR.V.GL.A.G.VG..F.....A....AIKVGPPPP.SGGLPGTDNSD.
Retrocopy GSKRTGLVIRAQQNESVPESSRRSVIGLVAAGLVGGSFVKSAVAAEALAIKVGPPPPPSGGLPGTDNSDQ

Parental  ARDFDLPLKNRFYLQPLPPAEAAVRAKESAQDILNLKPLIDKKQWPYVMNDLRLRASYLRYDLKTVISSK
          ARDF.L.LK.RFY.QPL.P.EAA.RAKESA..I.N.K.LIDKK.WPYV.NDLRLRASYLRYDL.TVIS.K
Retrocopy ARDFSLKLKDRFYIQPLSPTEAAARAKESAKEIINVKTLIDKKAWPYVQNDLRLRASYLRYDLNTVISAK

Parental  TTKEEKKDLKDLTGKLFATLDGLDHAAKIKSPTEAEKYYGETKTVLGDVLAKLG
          ..KEEK..LK.LTGKLF.T.D.LD.AA..KS...AEKYY.ET...L..VLAK.G
Retrocopy -PKEEKQSLKELTGKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKIG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_52 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_2DS_46C9F8F5F	1 retrocopy	retro_taes_52 ,