RetrogeneDB ID: retro_taes_5

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: IWGSC_CSS_4DS_scaff_772988:5..308(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: Traes_4DS_DB8C1AD1C
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_7AS_DD24F4515
• Aliases: None
• Description: None

Sequence

>retro_taes_5
ATGGCCGTCCCTTTACTTACGAAGAAGGTGGTGAAGAAGAGGTCCGCCAAGTTCATCAGACCCCAGAGCGACCGCAGAAT
CACCGTCAAGGAAAGCTGGAGGAGGCCAAAGGGTATTGACTCCAGGGTCCGAAGGAAGTTCAAAGGTGTGACATTGATGC
CCAATGTCGGTTACGGATCTGACAAGAAGACCCGTCACTACCTCCCCAATGGGTTCAAGAAGTTCGTTGTTCACAACACG
AGTGACCTCGAGTTGTTGATGATGCACAACAGGACTTACTGCGCAGAGATTGCACACAACGTC

Alignment

ORF - retro_taes_5 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.16 %
• Parental protein coverage: 75.94 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAVPLLTKKIVKKRVKHFKRAHSDRYIGLKQSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPN
          MAVPLLTKK.VKKR...F.R..SDR.I..K.SWRRPKGIDSRVRRKFKG.TLMPN.GYGSDKKTRHYLPN
Retrocopy MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGSDKKTRHYLPN

Parental  KFKKFVVHNVSELELLMMHNRTYCAEIAHNV
          .FKKFVVHN.S.LELLMMHNRTYCAEIAHNV
Retrocopy GFKKFVVHNTSDLELLMMHNRTYCAEIAHNV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_5 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Medicago truncatula	MTR_7g053180	1 retrocopy	retro_mtru_40,
Triticum aestivum	Traes_7AS_DD24F4515	1 retrocopy	retro_taes_5 ,