RetrogeneDB ID: retro_taes_44

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: IWGSC_CSS_4DS_scaff_2268466:2..1010(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: Traes_4DS_1F2DDA0C3
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_2AL_C51BB91CC
• Aliases: None
• Description: None

Sequence

>retro_taes_44
ATGGTATACGACTACTATGCCTCTGGTGCAGAGGACCAGTGGACTCTTCAAGAGAACCGAAACGCTTTCGCTAGGATCCT
CTTCCGGCCTCGGATTCTGATTGATGTGAGCAAGATTGATATGACAACAACCGTCTTGGGTTTCAAGATCTCCATGCCGA
TCATGGTTGCTCCTACTGCCATGCAAAAGATGGCTCACCCCGAAGGGGAATATGCTACGGCTAGAGCTGCATCTGCTGCT
GGAACCATCATGACACTGTCGTCATGGGCTACTTCCAGTGTTGAAGAGGTTGCTTCCACAGGACCAGGGATTCGTTTCTT
CCAACTCTATGTATACAAGAACAGGAAAGTGGTTGAGCAGCTCGTGAGAAGAGCCGAGAGGGCGGGGTTCAAAGCCATTG
CTCTCACTGTAGACACCCCAAGGCTAGGCCGAAGAGAGTCTGATATCAAGAACAGATTCACTTTGCCTCCAAACCTGACA
TTGAAGAACTTTGAAGGTCTCGACCTCGGAAAGATGGACGAGGCCAATGACTCTGGTTTGGCCTCATACGTTGCTGGCCA
AATTGACCGTACCTTAAGCTGGAAGGATGTCCAGTGGCTCCAGACAATCACTAGCATGCCGATTCTTGTCAAGGGTGTTA
TTACAGGAGAGGATGCAAGGATAGCGATTCAAGCTGGTGCAGCAGGGATCATTGTGTCTAACCATGGAGCTCGCCAGCTT
GACTATGTTCCCGCAACAATCTCAGCCCTTGAAGAGGTTGTCAAAGCGACACAAGGACGAATCCCTGTCTTCTTGGATGG
TGGTGTTCGTCGTGGCACTGACGTCTTCAAGGCACTTGCACTTGGAGCCTCAGGGATCTTTATTGGTAGACCAGTGGTGT
TCTCACTTGCTGCGGAAGGAGAGGCTGGAGTCAGAAAGGTGCTTCAAATGCTACGTGATGAGTTCGAGCTGACCATGGCA
CTAAGTGGGTGCAGGTCTCTCAAGGAAATCACCCGTAACCACATCACC

Alignment

ORF - retro_taes_44 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.96 %
• Parental protein coverage: 91.03 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MIYDYYASGAEDEWTLQENREAFARILFRPRILIDVSKIDMTTTILGFKLSMPIMISPTAMQKMAHPDGE
          M.YDYYASGAED.WTLQENR.AFARILFRPRILIDVSKIDMTTT.LGFK.SMPIM..PTAMQKMAHP.GE
Retrocopy MVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPEGE

Parental  YATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKDRKVVEQLVRRAEKAGFKAIALTVDTP
          YATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYK.RKVVEQLVRRAE.AGFKAIALTVDTP
Retrocopy YATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRKVVEQLVRRAERAGFKAIALTVDTP

Parental  RLGRREADIKNRFVLPPNLTLKNFEGLDLGKMDQANDSGLASYVAGQIDRTLSWKDVKWLQSITTMPILV
          RLGRRE.DIKNRF.LPPNLTLKNFEGLDLGKMD.ANDSGLASYVAGQIDRTLSWKDV.WLQ.IT.MPILV
Retrocopy RLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWLQTITSMPILV

Parental  KGVITAEDSRLAVENGAAGIIVSNHGARQLDYVPATISALEEVVKGAGGQIPVFLDGGVRRGTDVFKALA
          KGVIT.ED.R.A...GAAGIIVSNHGARQLDYVPATISALEEVVK...G.IPVFLDGGVRRGTDVFKALA
Retrocopy KGVITGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALA

Parental  LGAAGVFIGRPVVFSLAVAGEAGVSNVLKMLRDEFELTMALSGCNSLADITRNHV
          LGA.G.FIGRPVVFSLA..GEAGV..VL.MLRDEFELTMALSGC.SL..ITRNH.
Retrocopy LGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEITRNHI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_44 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_2AL_C51BB91CC	1 retrocopy	retro_taes_44 ,