slot maxwin

slot resmi

indohoki77

pgwin88

789betwin

ufabet

pgwin88

baht89

https://rr.lpsh.net/amp

ufabetwin

https://brss.pattani1.go.th/video/

https://sp.moe.go.th/web_sp_68/book/

https://dol-bangkok.com/video/

ufabetwin

okvip

okvip

https://aicode.cyp.ac.th/video/

max77

RetrogeneDB - Retrocopy retro_taes_30 details

RetrogeneDB ID:

retro_taes_30

Retrocopy
location
Organism:Wheat (Triticum aestivum)
Coordinates:3B:517649929..517650841(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:TRAES3BF079300010CFD_g
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:Traes_4BL_58C01D20F
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_taes_30
ATGACGGCGGGTCAGCCCCTCCGCGCCGATCCCCAGCAGCGCCGCCACAGCCTGCCGGCCCTCCACCCCGCCGTCGTGCC
TTCCTACCCGCCCCCGGAGTCCGACAACGACGAGTCCTGGGTCTGGTCCCAGATCAAGGCCGAGGCGCGCCGCGACGCCG
ACGCCGAGCCGGCGCTCGCCTCCTTCCTCTACGCCACCGTGCTGTCTCACCCGTCGCTCGAGCGCTCCCTCTCCTTCCAC
CTCGCCAACAAGCTCTGCTCCTCCACCCTCCTCTCCACGCTCCTCTACGACCTCTTCGTCGGCTCCCTCGCCGCGCACCC
CACCATCCGCGCCGCCGCCGTCGCCGACCTCCTCGCCGTGCGCTCACGGGATCCCGCCTGCGCCGGCTTCTCCCACTGCC
TCCTCAACTACAAGGGCTTCCTCGCCGTCCAGGCCCACCGCGTCGCGCACGTCCTCTGGGCGCAGAACCGCCGCGCCCTC
GCGCTCGCGCTCCAGTCCCGGGTCGCCGAGGTCTTCGCCGTCGACATCCACCCGGCCGCCGCCATCGGCAAGGGCATCCT
CCTGGACCACGCCACCGGGGTCGTCATAGGCGAGACCGCCGTCGTCGGCGACAACGTCTCAATCCTCCACCACGTCACGC
TGGGCGGGACCGGCAAGGCGGTGGGCGACCGGCACCCCAAGATCGGGGACGGTGTTCTGATTGGCGCCGGGGCGACGATC
CTGGGCAACGTGCTGATTGGCGCCGGGGCCAAGATCGGTGCCGGGTCGGTGGTGCTCATCGATGTGCCGCCGAGGAGCAC
CGCGGTGGGGAACCCCGCAAGGCTGATCGGCGGGAAGAAGGGCGACGACATGCCTGGGGAGTCCATGGACCATACCTCCT
TCATACAGCAGTGGTCAGACTACACCATTTGA

ORF - retro_taes_30 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 59.76 %
Parental protein coverage: 83.33 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalIWEAVKAEARSEAEKEPILSSFLYASVLSHDCLERALSFVLANRLEDPTLLATQLIDIFNDVMMNDVDIR
.W...KAEAR..A..EP.L.SFLYA.VLSH..LER.LSF.LAN.L...TLL.T.L.D.F.........IR
RetrocopyVWSQIKAEARRDADAEPALASFLYATVLSHPSLERSLSFHLANKLCSSTLLSTLLYDLFVGSLAAHPTIR
ParentalRSIRLDAQAFKGRDPSCAQYSWALLYLKGYHSLQSYRIAHVLWNQGRKVLALALQSRISEVFAVDIHPAA
.....D..A...RDP.CA..S..LL..KG....Q..R.AHVLW.Q.R..LALALQSR..EVFAVDIHPAA
RetrocopyAAAVADLLAVRSRDPACAGFSHCLLNYKGFLAVQAHRVAHVLWAQNRRALALALQSRVAEVFAVDIHPAA
ParentalKIGEGILLDHGTGLVIGETAVVGNWVSLMQGVTLGGTGKEHGDRHPKIGQGALLGAGATILGNITVGEGA
.IG.GILLDH.TG.VIGETAVVG..VS....VTLGGTGK..GDRHPKIG.G.L.GAGATILGN...G.GA
RetrocopyAIGKGILLDHATGVVIGETAVVGDNVSILHHVTLGGTGKAVGDRHPKIGDGVLIGAGATILGNVLIGAGA
ParentalMIAAGSLVLKHVPPHSMAVGNPAKVVGYTEKED-PSLTMKH
.I.AGS.VL..VPP.S.AVGNPA...G.....D.P...M.H
RetrocopyKIGAGSVVLIDVPPRSTAVGNPARLIGGKKGDDMPGESMDH

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Triticum aestivum was not studied using ChIP-Seq data.

EST - click to see more details

Triticum aestivum was not studied using EST data.

TSS - click to see more details

Triticum aestivum was not studied using FANTOM5 data.

Lab - click to see more details

retro_taes_30 was not experimentally validated.

Retrocopy orthology:
Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Triticum aestivum Traes_4BL_58C01D20F 1 retrocopy
retro_taes_30 ,


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