slot maxwin

slot resmi

indohoki77

pgwin88

789betwin

ufabet

pgwin88

baht89

https://rr.lpsh.net/amp

ufabetwin

https://brss.pattani1.go.th/video/

https://sp.moe.go.th/web_sp_68/book/

https://dol-bangkok.com/video/

ufabetwin

okvip

okvip

https://aicode.cyp.ac.th/video/

max77

RetrogeneDB - Retrocopy retro_taes_25 details

RetrogeneDB ID:

retro_taes_25

Retrocopy
location
Organism:Wheat (Triticum aestivum)
Coordinates:5B:200473498..200476255(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:Traes_5BL_CF34FCA90
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:TRAES3BF104000060CFD_g
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_taes_25
ATGCATAACTACGGAGGCGGCGGCGGGGCGGGGGACATCGTGGAGGCGGGCGGCGAGAGGGCCGTGCTGCCCCACAGCGG
GCCTCTGGTCGGGAAGCGCGCCGCCACGCGGAAGAGCGCGCGGTTCGCGGACTCCGTGTCCGCGCCGCTGCGCCGCGGGA
ACCACCACCATGGCCAGGACGACGACGACGACGACTACGTGGAGGTCACCCTCGACGTGCGGGACGACTCGGTGGCCGTG
CACAGCGTCAAGCCGGCGCCCGGCGGCGAGGAGGACCCCGACGTCACGCTGCTGGCGCGGGCGCTGGAGACGCGCTCCTC
CTCGTACGGCGGCAGGGCCCATGGCGGCGGCGTGCTCCGGAACGCGTCGACAAGGATCAAGCAGGTGTCGCAGGAGCTCC
GGAAAATCGCGTCCGTCAAGCGCCGCCCCAGCCGCATCGACCGGTCCAAGTCCGCCGCCGCGCACGCGCTCAAGGGGCTC
AAGTTCATCAGCCGCCCCGACGGCTGGCCCGNCGTTGAGAAGCGCTTCGACGAGCTCGCCGAGAACGGCGGCCTCCTCCA
CCGCTCCAAGTTCGGCAAGTGCATCGGGATGAAGGAGCTCGCCTTCGCCGGCGAGCTGTTCGACGCGCTCGCCAGGCGCC
GGGACATCTCCGGGGACAGCATCAGCAAGGCGGAGCTGCTCGAGTTCTGGGACCAGATCTCCGACACCAGCTTCGACAGC
CGCCTGCAGACCTTCTTCGACATGGTGGACAAGGACGCCGACGGCAGGATCACCGAGGCGGAGGTCGGGCAGATCATCGG
GCTCAGCGCCGCCGCCAACGACCTCAAGAAGATCACGGAGCGCACAGAAGAGTACGCCCGGCTCATCATGGAGGAGCTCG
ACCCCGACAACCTCGGCTACATCGAGCTGTCCAACCTGGAGACGCTGCTGCTGCAGGCGCCGCCGACCCAGCCGACGCGG
GGCGGGAGCGGGACGACCAGCAGCCGTAACCTCAGCCAGATGCTGAGCCAGCACCTCAAGCCGACGACGGAGCCCAACCC
GCTCCGCCGGTGGTACCGCCGCGCCAGCTACTTCCTGGAGGACAACTGGCGCCGTTGCTGGGTGATCATCCTGTGGTTCT
CCATCTGCGCCGGCCTCTTCGCCTGGAAGTTCGTGCAGTACCGGCGGCGCGCCGTGTTCGAGGTGATGGGCTACTGCGTG
TGCGTCGCCAAGGGCGGCGCCGAGACGCTCAAGTTCAACATGGCGCTCGTGCTCCTCCCCGTGTGCCGCAACACCATCAC
GTGGCTCCGCAACCGCACCGCCGCGGGGCGGGTCGTGCCGTTCGACGACAACCTCAACTTCCACAAGGTGATCGCCGCGG
GGATCACCGTCGGCGCCGGGATGCACATCATCTCCCATTTGGCGTGCGACTTCCCGCGGCTGCTGCACGCCACCGAGGAG
GAGTACGAGCCGATGAAGCCTTTCTTCGGCGACGTCAAGCCGCCCAACTACTGGTGGTTCGTCAAGGGCACGGAGGGGTG
GACGGGGCTGGTGATGCTGGCGCTCATGGCCGTCGCCTTCACGCTCGCCACGCCGTGGTTCCGCCGCGGCAGGGTCCGCC
TCCCGGGGCCGCTCAGCCGGCTCACCGGGTTCAACGCCTTCTGGTACACGCACCACCTCTTCATCATCGTCTACGCGCTG
CTCATCGTCCACGGCCACTTCCTCTACCTCACCAAGAAGTGGCAGAAGAAGTCGACGTGGATGTACCTGGCGGCGCCGAT
GGTCCTGTACGCGTGCGAGCGGCTGGCGCGGGCGCTCCGGTCCAGCGTGCGGCCGGTGAAGATACTCAAGGTCGCCGTGT
ACCCCGGCAACGTGCTGTCGCTGCGCTTCTCCAAGCCGCAGGGGTTCAGGTGCAAGAGCGGGCAGTACATCTTCGTCAAC
TGCGCCGCCGTCTCGCCGTTCCAGTGGCACCCGTTCTCCATCACGTCGGCGCCGCACGACGACTACATCAGCGTCCACAT
CAGGACGCTCGGCGACTGGACCCGGGAGCTCAAGAGCGTCTTCGAGAAGGTTTGCCGGCCGCCGACGGACGGGAAGAGCG
GGCTGCTCCGGGCAGAGTACGCCGGTGACGGCGGTGCCATGCCCAGCCCGAGCAGCTTCCCCACGGTGCTGATCGACGGG
CCGTACGGCGCGCCGGCGCAGGACTACAAGCAATACGACGTGGTGCTGCTGGTGGGGCTGGGCATCGGGGCCACGCCCAT
GATCTCCATCATCAAGGACATCATCAACAACATGAAGCGGCTCGACGGCGACATCGAGTCCGGCAGCCCCAGCGACAGGA
GCGTGTCGGCGGCGTCGTTCCGGACGCGGCGCGCCTACTTCTACTGGGTGACGCGGGAGGAAGGCTCCTTCGACTGGTTC
CGCGGCGTCATGGACGAGGTGGCCGAGAGCGACAAGAAGGGCATCATCGAGCTCCATAACTACTGCACCAGCGTCTACGA
GGAAGGGGACGCCCGGTCGGCGCTCATCGCCATGCTCCAGTCCCTCAACCACGCCAAGCACGGCGTCGACGTCGTCTCCG
GCACACGCGTCAAGACCCACTTCGCCCGGCCCAACTGGCGCAAAGTCTACAAGGACATCGCCATCGCCCACGCCGGGCAG
CGCGTCGGAGTGTTCTACTGCGGCGCACCGGTGCTGATAAAGGAGCTGCGCCAGCTTGCCCAAGATTTCTCGAGGAAGAC
GAGCACCAAATTCGAGTTCCACAAGGAGAATTTCTAA

ORF - retro_taes_25 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 62.21 %
Parental protein coverage: 90.87 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalALVSPSSSRGGKLSSKLRQVTNGLKLTNPSKKVPPSPAAKTVRKRYDRSKSSAAVALKGLQFVTAKVGND
AL...SSS.GG..................S.........K....R.DRSKS.AA.ALKGL.F.......D
RetrocopyALETRSSSYGGRAHGGGVLRNASTRIKQVSQELRKIASVKRRPSRIDRSKSAAAHALKGLKFISRP---D
ParentalGWTAVEKRFNHLQVDGMLL-RSRFGKCIGMEGSDEFAMQMFDSLARKRGMVKQVLTKEELKDFWEQLSDQ
GW..VEKRF..L...G.LL.RS.FGKCIGM.....FA...FD.LAR.R........K.EL..FW.Q.SD.
RetrocopyGWPXVEKRFDELAENGGLLHRSKFGKCIGMKEL-AFAGELFDALARRRDISGDSISKAELLEFWDQISDT
ParentalGFDNRLQTFFDMVDKNADGRITSEEVKEIIALSASANKLSKIKERADEYTALIMEELDPNNLGYIELEDL
.FD.RLQTFFDMVDK.ADGRIT..EV..II.LSA.AN.L.KI.ER..EY..LIMEELDP.NLGYIEL..L
RetrocopySFDSRLQTFFDMVDKDADGRITEAEVGQIIGLSAAANDLKKITERTEEYARLIMEELDPDNLGYIELSNL
ParentalEALLLQSPSEAVAR--STTTHSSKLSKALSMKLAPSNDTSPLRRHWQEFLYFVEENWKRIWVMTLWISIC
E.LLLQ.P.....R..S.TT.S..LS..LS..L.P.....PLRR......YF.E.NW.R.WV..LW.SIC
RetrocopyETLLLQAPPTQPTRGGSGTTSSRNLSQMLSQHLKPTTEPNPLRRWYRRASYFLEDNWRRCWVIILWFSIC
ParentalIALFIWKFIQYRNRAVFHIMGYCVATAKGAAETLKFNMALVLLPVCRNTITWIRSKTKIGAVVPFNDNIN
..LF.WKF.QYR.RAVF..MGYCV..AKG.AETLKFNMALVLLPVCRNTITW.R..T..G.VVPF.DN.N
RetrocopyAGLFAWKFVQYRRRAVFEVMGYCVCVAKGGAETLKFNMALVLLPVCRNTITWLRNRTAAGRVVPFDDNLN
ParentalFHKVIAAGVAVGVALHAGAHLTCDFPLLLHASDAKYEPMKPFFGDKRPPNYWWFVKGTAGWTGIVMVVLM
FHKVIAAG..VG...H...HL.CDFP.LLHA....YEPMKPFFGD..PPNYWWFVKGT.GWTG.VM..LM
RetrocopyFHKVIAAGITVGAGMHIISHLACDFPRLLHATEEEYEPMKPFFGDVKPPNYWWFVKGTEGWTGLVMLALM
ParentalSIAFVLAQPWFRRNKLKDTNPLKKMTGFNAFWFTHHLFAIVYALLIVHGTSLYLTKEWYKKSTWMYIAYP
..AF.LA.PWFRR.......PL...TGFNAFW.THHLF.IVYALLIVHG..LYLTK.W.KKSTWMY.A.P
RetrocopyAVAFTLATPWFRRGRVRLPGPLSRLTGFNAFWYTHHLFIIVYALLIVHGHFLYLTKKWQKKSTWMYLAAP
ParentalVFLYSCERIVRLFRSH-DAVKIQKVAVYPGHVLALYMSKPTGFRYRSGQYIFINCRAVSPYEWHPFSITS
..LY.CER..R..RS....VKI.KVAVYPG.VL.L..SKP.GFR..SGQYIF.NC.AVSP..WHPFSITS
RetrocopyMVLYACERLARALRSSVRPVKILKVAVYPGNVLSLRFSKPQGFRCKSGQYIFVNCAAVSPFQWHPFSITS
ParentalAPGDNYLSVHIRTRGDWTSRLRTVFSEACRPPAEGESGLLRADLS--RGITDSNARFPKLLIDGPYGAPA
AP.D.Y.SVHIRT.GDWT..L..VF...CRPP..G.SGLLRA......G...S...FP..LIDGPYGAPA
RetrocopyAPHDDYISVHIRTLGDWTRELKSVFEKVCRPPTDGKSGLLRAEYAGDGGAMPSPSSFPTVLIDGPYGAPA
ParentalQDYREYDVLLLIGLGIGATPLISIVKDVLNHIQP-GGSVGGAEPGGTGKAKKRQFMTKRAYFYWVTREEG
QDY..YDV.LL.GLGIGATP.ISI.KD..N......G......P..........F.T.RAYFYWVTREEG
RetrocopyQDYKQYDVVLLVGLGIGATPMISIIKDIINNMKRLDGDIESGSPSDR-SVSAASFRTRRAYFYWVTREEG
ParentalSFEWFRGVMNEVAEKDKDQVIELHNHCSSVYQEGDARSALIVMLQELQHAKKGVDILSGTSVKTHFARPN
SF.WFRGVM.EVAE.DK...IELHN.C.SVY.EGDARSALI.MLQ.L.HAK.GVD..SGT.VKTHFARPN
RetrocopySFDWFRGVMDEVAESDKKGIIELHNYCTSVYEEGDARSALIAMLQSLNHAKHGVDVVSGTRVKTHFARPN
ParentalWRSVFKRVAVNHENQRVGVFYCGEPVLVPQLRQLSADFTHKTNTKFEFHKENF
WR.V.K..A..H..QRVGVFYCG.PVL...LRQL..DF..KT.TKFEFHKENF
RetrocopyWRKVYKDIAIAHAGQRVGVFYCGAPVLIKELRQLAQDFSRKTSTKFEFHKENF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Triticum aestivum was not studied using ChIP-Seq data.

EST - click to see more details

Triticum aestivum was not studied using EST data.

TSS - click to see more details

Triticum aestivum was not studied using FANTOM5 data.

Lab - click to see more details

retro_taes_25 was not experimentally validated.

Retrocopy orthology:
Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Triticum aestivum TRAES3BF104000060CFD_g 1 retrocopy
retro_taes_25 ,


Copyright © RetrogeneDB 2014-2017