RetrogeneDB ID: retro_taes_23

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: IWGSC_CSS_4DL_scaff_14451567:891..1323(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: Traes_4DL_4F2B74143
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_6DS_7FDD8343D
• Aliases: None
• Description: None

Sequence

>retro_taes_23
ATGACGCTGCGCTTCGTACTGATGGTGAACAAGCAGGGGCAGACGCGGCTCGCGCAGTACTACGAGCGGCTGCCTATGGA
CGAGCGCTGCGCTCTCGAGGCGGAGGTGATCCGCAAGTGCCTCGCGCGGACAGAGACGCAGTGCTCGTTCTTCGAGTACC
GCGGGTACAAGGTGGTGTACCGGCGGTACGCCTCGCTCTTCTTCATCGTCGGCGTCGAGGGCGACGACGAGAACGAGCTC
TCCATCCTCGAGTTCATCCACGCGCTCGTCGAGACACTTGACCGCTACTTTGAGAACGTCTGCGAGCTGGACATCATGTT
CAACCTGGAGAAGGCGCACTTCATTCTCGACGAGATGGTGATGAATGGCTGCATCATCGAGACAAACAAGAACAACATCC
TGAGCCCGGTGATGCTGCTCGACAAGACGGGC

Alignment

ORF - retro_taes_23 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.83 %
• Parental protein coverage: 99.3 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGIRFVLLVNKQGQTRLAQYYEHLSLDERRALEGEIVRKCLARTDQQCSFVEHRNYKVVYRRYASLFFLV
          M..RFVL.VNKQGQTRLAQYYE.L..DER.ALE.E..RKCLART..QCSF.E.R.YKVVYRRYASLFF.V
Retrocopy MTLRFVLMVNKQGQTRLAQYYERLPMDERCALEAEVIRKCLARTETQCSFFEYRGYKVVYRRYASLFFIV

Parental  GVD-NDENELAILEFIHLLVETMDRHFGNVCELDIMFHLEKVHFMLEEMVMNGCIVETSKQNILAPIQLM
          GV...DENEL.ILEFIH.LVET.DR.F.NVCELDIMF.LEK.HF.L.EMVMNGCI.ET.K.NIL.P..L.
Retrocopy GVEGDDENELSILEFIHALVETLDRYFENVCELDIMFNLEKAHFILDEMVMNGCIIETNKNNILSPVMLL

Parental  EKT
          .KT
Retrocopy DKT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_23 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_6DS_7FDD8343D	1 retrocopy	retro_taes_23 ,