RetrogeneDB ID: retro_taes_202

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: IWGSC_CSS_4DL_scaff_14338453:646..1033(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_4DL_D26869D79
• Aliases: None
• Description: None

Sequence

>retro_taes_202
TACAAGTACAGCTTCCTCGGCGACGACTCTGCTATCACGGTGGACGACAACCGTGTTGGCCCGCTGTACAAGCACGTGTT
CCCGCCGCGACTGGCCCCTAGCATCTCCTTCGTCGGGCTGCCATTCAAGGGAATCCTTTTCCCGGTGTTCCAGCTCCAGA
ACAGCTGGGTGGCCGGGGTTCTGTCGGGGAGGATCAAGCTCTCGTCGCCGGACGAGATGATGGTGGAGGTGGCGTCCTTC
TACTCGGACATGGAGGCCCGCGGACGCCCCAAGAGGTTCACCCACGACCTCGGCGTAAGCACGTTCGAGTACCAGGATTG
GCTGGTTGATCGGTGCGGGCTGGAGAGGATCGAGGAGTGGAGGAAGGCCATCTACGTTATGAGTCAA

Alignment

ORF - retro_taes_202 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.94 %
• Parental protein coverage: 56.71 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  YRFPFLEEDGMVSVDDNRVGPLYKHVFPPQMAPHISFIGLPFKSILFPVFRLQSNWVAGALSGRIELPSP
          Y...FL..D....VDDNRVGPLYKHVFPP..AP.ISF.GLPFK.ILFPVF.LQ..WVAG.LSGRI.L.SP
Retrocopy YKYSFLGDDSAITVDDNRVGPLYKHVFPPRLAPSISFVGLPFKGILFPVFQLQNSWVAGVLSGRIKLSSP

Parental  EEMMLDVMAFYSDMEARGWPKRFTHNLGVEAWTFEYEDWLAEQCGLDKMEEWRRVIYVAAR
          .EMM..V..FYSDMEARG.PKRFTH.LGV...TFEY.DWL...CGL...EEWR..IYV...
Retrocopy DEMMVEVASFYSDMEARGRPKRFTHDLGVS--TFEYQDWLVDRCGLERIEEWRKAIYVMSQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_202 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_4DL_D26869D79	2 retrocopies	retro_taes_202 , retro_taes_203,