RetrogeneDB ID: retro_taes_192

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: IWGSC_CSS_4AL_scaff_1156055:5846..6884(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_6AS_A34A8593D
• Aliases: None
• Description: None

Sequence

>retro_taes_192
GTAAACGGTGAATGGACTGCAGCACATAACGGAGAAACTTTACCAGTAACAAATCCATCAACAGGGAAAGTTGTGGCAAG
GATTCCAAGTGGAGGACGCCAAGAAACGCATGCTGCAATTGCAGCTGCTGAGGAAGCGTTTAAAACCTGGTCAAAACTGA
CGGCACAGGAACGCAGTAAATATCTTAAGAAATTGCATGACCTTATGCATGAATATAAAGATGAATTAGCAGAAATCATG
AGTATGGAAATGGGCAAGCCCTTAATGGAAGCCCGGGGTGAAGTGGATTTTGCTGCAAGCTACCTGGAATGGTTTGCTGA
AGAGGGCCGACGGATTTATGGGGAAACGATCCCTGCTTCTGCCGCAAATAAAAGGCTATCGGTGATCCGCCAGCCGATTG
GAGTGGTTGCTTCCATTACCCCTTGGAATTTCCCGTTGGCCATGATGACGCGGAAAGTAGGACCTGCCATGGCTGCTGGA
TGTACAGTCATTGTCAAGCCTGCAAAACAATCTCCTATTAGTGCATTAGCGTTTGGTAAATTGGTGGAAATGGCGGGAGT
GCCTGCTGGAGTGGTCAGTATCGTAACAGGGAGTGCCGGACCTATCTCGGATGAAATTTTTGAAAATCCGGTAGTAAGGA
AAATATCTTTTACCGGATCTACTGAAGTAGGAAAATTGCTGGTTACCAAGTCAGCCCCGCAGCTCAAGAGACTTTCCCTT
GAGCTTGGAGGACACGCGCCCTTCATCGTTTTTGAGGATGCTGATTTGGAAGCCGCAGCAGCTGGTGCCGTTGCAAGCAA
GTTCAGGAACACCGGACAAACGTGCGTATGCGCAAATCGAATTTACGTCCACCGTTCTGTCATCAATGAATTCTCGGCAC
TTTTTGTTGAAAAGGTACAAGCTCTAAAAGTCGGAAATAGCATTGATCCAACTGTTGAAGTCGGGCCTCTTGTCAGCAGT
GATGGCCTGGAAAAGGTAGAGGAGCATGTACAAGATGCCTTGGAAAAAGGCGCCAGCCTTCTTTGTGGCGGACAAAGA

Alignment

ORF - retro_taes_192 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 53.47 %
• Parental protein coverage: 65.78 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  IGGQWVDAYDGKTIEVQNPATGEVLANVACMGNRETADAITSANTTFYTWSKLTASERSKALRKWHDLLM
          ..G.W..A..G.T..V.NP.TG.V.A.....G..ET..AI..A...F.TWSKLTA.ERSK.L.K.HDL..
Retrocopy VNGEWTAAHNGETLPVTNPSTGKVVARIPSGGRQETHAAIAAAEEAFKTWSKLTAQERSKYLKKLHDLMH

Parental  SHKEELALLMTLEQGKPMKEALGEVNYGASFIEFFAEEAKRVYGDIIPPTLADRRLLVLKQPIGVVGAIT
          ..K.ELA..M..E.GKP..EA.GEV...AS..E.FAEE..R.YG..IP...A..RL.V..QPIGVV..IT
Retrocopy EYKDELAEIMSMEMGKPLMEARGEVDFAASYLEWFAEEGRRIYGETIPASAANKRLSVIRQPIGVVASIT

Parental  PWNFPLAMITRKVGPALACGCTVVVKPSEFTPLTALAAADLALQAGIPAGALNVVMGNAPEIGDELMQST
          PWNFPLAM.TRKVGPA.A.GCTV.VKP....P..ALA...L...AG.PAG....V.G.A..I.DE.....
Retrocopy PWNFPLAMMTRKVGPAMAAGCTVIVKPAKQSPISALAFGKLVEMAGVPAGVVSIVTGSAGPISDEIFENP

Parental  QVRKITFTGSTAVGKKLMAGSANTVKKVSLELGGNAPCIVFDDADIDVAVKGSLAAKFRNSGQTCVCANR
          .VRKI.FTGST.VGK.L...SA...K..SLELGG.AP.IVF.DAD...A..G..A.KFRN.GQTCVCANR
Retrocopy VVRKISFTGSTEVGKLLVTKSAPQLKRLSLELGGHAPFIVFEDADLEAAAAGAVASKFRNTGQTCVCANR

Parental  ILVQEGIYEKFASAFVKAVQSLQVGNGLEESTSQGPLINEAAVEKVEKFVGDATSKGANIMLGGKR
          I.V.......F...FV..VQ.L.VGN........GPL......EKVE..V.DA..KGA....GG.R
Retrocopy IYVHRSVINEFSALFVEKVQALKVGNSIDPTVEVGPLVSSDGLEKVEEHVQDALEKGASLLCGGQR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_192 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_6AS_A34A8593D	3 retrocopies	retro_taes_168, retro_taes_192 , retro_taes_209,