RetrogeneDB ID: retro_taes_186

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: IWGSC_CSS_2BS_scaff_5244165:1295..2279(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_5DS_2145F8A9E
• Aliases: None
• Description: None

Sequence

>retro_taes_186
GAGGAGGTGGCGAGGCGCGGCGGCGCCATGAGGACCCGCGTGTGCGCGCGCGTCGGCACGCCGCAGGGCGTCGGGGCACT
GCTCCTCGTCGGGGGCGCGATCGCCGGTGCCGCCGTCGTCGCGTGGCGGCGCCACGGTGACGGAAAGGGCGCCAAGAAGG
ACCGCTGCAGCAAGGAGGACGACGTTCTGGATGGCGGGGTCGTGGAGAAGGAGCAACAGAAGTCTGATCAATCTGATGAG
AATCTGGGCAGGGAGGTTAGAGAGGTTGAAGCTGATGGGTTGGATGGTAAGGAAGTAGAGGAGCTTCAAGAGATTCAGGA
GCAGGTGGATGAAATTCTTGCTGATGAATTGGATAGCAAACCTACAGATAATTTGGATCCAAACGCAAGCCAGGAAAGTG
CCGAGATCATTAATGATCCGGACAGTGAAGATATGAAGAATCCTGACCAAAATTCAGTGAAGAGCTGCGTCGAGAATGAG
GTCACACCAAATGCCACCGAAGGTGTGAAGAATTCCGATGAAAGCTTTCTTCCCATCAATAGCCCGGAGATCACCCATGA
AGAACATATCGGGCACGGCCATGGCGGTGATCAACAGACCTCATCAACACAGATGACAGCGCATCAGTCACAGATCTCAG
AGCAACTGAAAGTGGATACCATGACCGAAACAGCAACGGTGGAGAATGTGTCGAAGCAGAAACCGCCTGCACAAGAGCGG
GTCGCGCCCATCAACTCACCCGCATGTCCTTCACTGCCAGCTCTGTTTAAACCAGCAGAGAAGAAGAGACCAGCGAACAC
GGGGTGGAATGAGACAGGGATGAAGCTTGGACAAGATGGCGGCAGCAAGAAGGCAGCAGCAAAGGGTGTAGCCGTGGTGA
CCATGGATCGTAGAGCTGCTTCAATGGCCATTCTCGCCATCATCTTTGCAGTGACCATTGGAGTAAACGTCGTCGTGCGC
TTGTACTCCACTTTGCGAGCGGCA

Alignment

ORF - retro_taes_186 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.52 %
• Parental protein coverage: 94.57 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EEVARRGGAMRTRVCARVGSPQGVGALLLVGGAIVGAAVVAWRRRGDGKGAKKDRRGKEDDVLDGGVVEN
          EEVARRGGAMRTRVCARVG.PQGVGALLLVGGAI.GAAVVAWRR.GDGKGAKKDR..KEDDVLDGGVVE.
Retrocopy EEVARRGGAMRTRVCARVGTPQGVGALLLVGGAIAGAAVVAWRRHGDGKGAKKDRCSKEDDVLDGGVVEK

Parental  EQQKSDQSDENLSMEVREVEADGLDGKEAEELHEIQEQVDEIVADELDSEPTDNFDPNASKERAEIVNDT
          EQQKSDQSDENL..EVREVEADGLDGKE.EEL.EIQEQVDEI.ADELDS.PTDN.DPNAS.E.AEI.ND.
Retrocopy EQQKSDQSDENLGREVREVEADGLDGKEVEELQEIQEQVDEILADELDSKPTDNLDPNASQESAEIINDP

Parental  DSEDEKNPDQNSVNSCVENEIAPNATQGVKNSDESTLTINSPEVAHEEHIGQGHDDDQETASTQMTAHQS
          DSED.KNPDQNSV.SCVENE..PNAT.GVKNSDES.L.INSPE..HEEHIG.GH..DQ.T.STQMTAHQS
Retrocopy DSEDMKNPDQNSVKSCVENEVTPNATEGVKNSDESFLPINSPEITHEEHIGHGHGGDQQTSSTQMTAHQS

Parental  QISEQLKVDTMTETATVENVSKHEEQKPPAQELVAPIDSPACPSLPALFKPAEKKRPANTGWNETGMKLG
          QISEQLKVDTMTETATVENVSK...QKPPAQE.VAPI.SPACPSLPALFKPAEKKRPANTGWNETGMKLG
Retrocopy QISEQLKVDTMTETATVENVSK---QKPPAQERVAPINSPACPSLPALFKPAEKKRPANTGWNETGMKLG

Parental  QDGGSKKAAAKGVAVVTMDRRAASMAILAIIFAVTIGANVVMRLYSTLRAA
          QDGGSKKAAAKGVAVVTMDRRAASMAILAIIFAVTIG.NVV.RLYSTLRAA
Retrocopy QDGGSKKAAAKGVAVVTMDRRAASMAILAIIFAVTIGVNVVVRLYSTLRAA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_186 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_5DS_2145F8A9E	5 retrocopies	retro_taes_102, retro_taes_115, retro_taes_116, retro_taes_185, retro_taes_186 ,