RetrogeneDB ID: | retro_taes_169 | ||
Retrocopy location | Organism: | Wheat (Triticum aestivum) | |
| Coordinates: | IWGSC_CSS_2AL_scaff_6326632:5238..5584(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | Traes_2AL_841CB993F | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_taes_169
GTGGCATTTAATTATTCTCCTGGCATGATATTTAAGCATGTTGCATATACCAATCTGTTGATAATTCAATTATTGATTCT
GATGTACAAACATGCAAAACCATTGCCTGTTTGGATGATGCACATGAGTATGTTTTTGTTAGTTTTCGGTGATGTACGTC
GTGAAGCGGGACGGGCGGACGGAGACGGTGCACTTTGACAAGATCACGGTGCGGCTCAAGAAGCTCAGCAATGGGCTCAG
CCAGGAGCACCGCAACCCCGTGCTCGGTCTGCGTCAGGGTATACATGGGCGTCACCACCAGCCAGCTCACCACCGAGACC
GCCGCCGCGCTCACCGCCTCCCAGCC
ORF - retro_taes_169 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 66.67 % |
| Parental protein coverage: | 97.48 % |
| Number of stop codons detected: | 3 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | VFFRYNTPDVFHEMSMSWNMYILSSSLMRLP-LQHTSLQGPRVGMIFYKFSVMYVVKRDGRTETVHFDKI |
| V.F.Y.....F.......N..I...........Q...L.G......F..FSVMYVVKRDGRTETVHFDKI | |
| Retrocopy | VAFNYSPGMIFKHVAYT-NLLIIQLLILMYK>MQNHCLFG*CT*VCFC*FSVMYVVKRDGRTETVHFDKI |
| Parental | TVRLKKLSNGLSQEHRNPVLGLRQGIHGRHHQPAHHRDRRRAHRLPA |
| TVRLKKLSNGLSQEHRNPVLGLRQGIHGRHHQPAHHRDRRRAHRLPA | |
| Retrocopy | TVRLKKLSNGLSQEHRNPVLGLRQGIHGRHHQPAHHRDRRRAHRLPA |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Triticum aestivum was not studied using RNA-Seq expression data.
Triticum aestivum was not studied using ChIP-Seq data.
Triticum aestivum was not studied using EST data.
Triticum aestivum was not studied using FANTOM5 data.
retro_taes_169 was not experimentally validated.
Retrocopy orthology:
Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Triticum aestivum | Traes_2AL_841CB993F | 1 retrocopy |
retro_taes_169 ,
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