RetrogeneDB ID: retro_taes_166

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 7D:211408181..211408634(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_5BL_8FFD203BD
• Aliases: None
• Description: None

Sequence

>retro_taes_166
CAGATCTTTGTGAAGACACTCACCGGCAAGACCATCACTCTCGAGGTTGAGTCTTCCGACACAATTAACAATGTCAAAGC
GAAAATCCACGATAAGGAGGGCATACTACCGGACCAGCAGCGCCTCATCTTTGCAGGCAAGCAGTTTGAGGGCGGACGCA
CCCTTGCTGATTACAACATTCAGAAAGAGTCCACGTTGCACCTGGTAATTCGCCTCTGTGGAGGCATGCAAATCTTTGTG
AAGACCTTGACTGGCAAGATCATTACCCTAGATGTTGAGTCTTCTGACACCATTGACAATGTTAAAGCCAGGATCCAGGA
TAAGGAGGGTATCCCCCCGGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACTCTGACTGATT
ACAACATTCAGAAGGAGTCTACTCTCCACCTGGTGCTCCGCCTTCATGGTGGC

Alignment

ORF - retro_taes_166 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.82 %
• Parental protein coverage: 98.69 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL
          QIFVKTLTGKTITLEVESSDTI.NVKAKI.DKEGI.PDQQRLIFAGKQ.E.GRTLADYNIQKESTLHLV.
Retrocopy QIFVKTLTGKTITLEVESSDTINNVKAKIHDKEGILPDQQRLIFAGKQFEGGRTLADYNIQKESTLHLVI

Parental  RLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGS
          RL.GG..I.VKTLTGK.I..D.E..DTID..K.R...KEGIPP.QQRLI.AGKQL.D..T..DYNI...S
Retrocopy RLCGGMQIFVKTLTGKIITLDVESSDTIDNVKARIQDKEGIPPDQQRLIFAGKQLEDGRTLTDYNIQKES

Parental  VLHLVLALRGG
          .LHLVL.L.GG
Retrocopy TLHLVLRLHGG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_166 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Musa acuminata	GSMUA_Achr3G30150_001	1 retrocopy	retro_macu_90,
Triticum aestivum	Traes_5BL_8FFD203BD	4 retrocopies	retro_taes_156, retro_taes_160, retro_taes_166 , retro_taes_45,